Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0232 and Dshi_0233 are separated by 155 nucleotides Dshi_0233 and Dshi_0234 are separated by 72 nucleotides
Dshi_0232: Dshi_0232 - hypothetical protein (RefSeq), at 228,403 to 229,473
_0232
Dshi_0233: Dshi_0233 - Citrate transporter (RefSeq), at 229,629 to 231,512
_0233
Dshi_0234: Dshi_0234 - hypothetical protein (RefSeq), at 231,585 to 232,649
_0234
Position (kb) 229
230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 228.686 kb on + strand, within Dshi_0232 at 228.710 kb on + strand, within Dshi_0232 at 228.726 kb on - strand, within Dshi_0232 at 228.735 kb on + strand, within Dshi_0232 at 228.869 kb on + strand, within Dshi_0232 at 228.919 kb on - strand, within Dshi_0232 at 228.938 kb on - strand, within Dshi_0232 at 228.992 kb on - strand, within Dshi_0232 at 229.025 kb on - strand, within Dshi_0232 at 229.063 kb on + strand, within Dshi_0232 at 229.197 kb on - strand, within Dshi_0232 at 229.277 kb on - strand, within Dshi_0232 at 229.307 kb on + strand, within Dshi_0232 at 229.523 kb on + strand at 229.615 kb on + strand at 229.615 kb on + strand at 229.615 kb on + strand at 229.623 kb on - strand at 229.623 kb on - strand at 229.623 kb on - strand at 229.634 kb on - strand at 229.777 kb on - strand at 229.798 kb on - strand at 229.822 kb on + strand, within Dshi_0233 at 229.822 kb on + strand, within Dshi_0233 at 229.822 kb on + strand, within Dshi_0233 at 229.884 kb on + strand, within Dshi_0233 at 230.015 kb on + strand, within Dshi_0233 at 230.079 kb on + strand, within Dshi_0233 at 230.136 kb on - strand, within Dshi_0233 at 230.258 kb on + strand, within Dshi_0233 at 230.291 kb on + strand, within Dshi_0233 at 230.292 kb on - strand, within Dshi_0233 at 230.428 kb on - strand, within Dshi_0233 at 230.428 kb on - strand, within Dshi_0233 at 230.428 kb on - strand, within Dshi_0233 at 230.475 kb on - strand, within Dshi_0233 at 230.601 kb on - strand, within Dshi_0233 at 230.629 kb on - strand, within Dshi_0233 at 230.639 kb on + strand, within Dshi_0233 at 230.679 kb on - strand, within Dshi_0233 at 230.791 kb on - strand, within Dshi_0233 at 230.806 kb on + strand, within Dshi_0233 at 230.849 kb on - strand, within Dshi_0233 at 231.047 kb on - strand, within Dshi_0233 at 231.096 kb on - strand, within Dshi_0233 at 231.112 kb on + strand, within Dshi_0233 at 231.183 kb on - strand, within Dshi_0233 at 231.387 kb on + strand at 231.400 kb on - strand at 231.467 kb on + strand at 231.475 kb on - strand at 231.488 kb on - strand at 231.499 kb on + strand at 231.543 kb on + strand at 231.545 kb on - strand at 231.551 kb on - strand at 231.582 kb on + strand at 231.588 kb on + strand at 231.617 kb on + strand at 231.669 kb on - strand at 231.900 kb on + strand, within Dshi_0234 at 231.935 kb on + strand, within Dshi_0234 at 232.026 kb on - strand, within Dshi_0234 at 232.044 kb on - strand, within Dshi_0234
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 228,686 + Dshi_0232 0.26 -1.6 228,710 + Dshi_0232 0.29 +0.3 228,726 - Dshi_0232 0.30 +0.4 228,735 + Dshi_0232 0.31 +0.4 228,869 + Dshi_0232 0.44 -0.0 228,919 - Dshi_0232 0.48 +1.4 228,938 - Dshi_0232 0.50 -0.5 228,992 - Dshi_0232 0.55 +3.9 229,025 - Dshi_0232 0.58 -0.6 229,063 + Dshi_0232 0.62 -0.3 229,197 - Dshi_0232 0.74 +0.3 229,277 - Dshi_0232 0.82 +2.0 229,307 + Dshi_0232 0.84 -0.7 229,523 + +3.0 229,615 + -1.9 229,615 + +0.6 229,615 + +0.8 229,623 - +1.2 229,623 - +1.0 229,623 - +2.4 229,634 - -1.0 229,777 - -0.5 229,798 - -2.4 229,822 + Dshi_0233 0.10 +0.2 229,822 + Dshi_0233 0.10 +0.7 229,822 + Dshi_0233 0.10 -1.3 229,884 + Dshi_0233 0.14 -1.2 230,015 + Dshi_0233 0.20 -0.5 230,079 + Dshi_0233 0.24 +0.4 230,136 - Dshi_0233 0.27 +0.1 230,258 + Dshi_0233 0.33 -2.6 230,291 + Dshi_0233 0.35 +3.2 230,292 - Dshi_0233 0.35 -1.2 230,428 - Dshi_0233 0.42 +1.4 230,428 - Dshi_0233 0.42 +0.2 230,428 - Dshi_0233 0.42 +0.1 230,475 - Dshi_0233 0.45 -0.5 230,601 - Dshi_0233 0.52 -0.2 230,629 - Dshi_0233 0.53 -0.9 230,639 + Dshi_0233 0.54 +0.2 230,679 - Dshi_0233 0.56 +2.0 230,791 - Dshi_0233 0.62 -0.3 230,806 + Dshi_0233 0.62 +2.7 230,849 - Dshi_0233 0.65 -0.7 231,047 - Dshi_0233 0.75 -0.0 231,096 - Dshi_0233 0.78 +0.1 231,112 + Dshi_0233 0.79 -1.1 231,183 - Dshi_0233 0.82 -2.0 231,387 + +0.4 231,400 - +1.2 231,467 + +1.4 231,475 - -0.1 231,488 - -0.3 231,499 + -0.4 231,543 + -2.7 231,545 - +1.1 231,551 - -1.1 231,582 + +1.0 231,588 + -1.5 231,617 + +0.4 231,669 - +0.4 231,900 + Dshi_0234 0.30 -0.7 231,935 + Dshi_0234 0.33 -1.2 232,026 - Dshi_0234 0.41 -1.4 232,044 - Dshi_0234 0.43 +1.4
Or see this region's nucleotide sequence