Strain Fitness in Shewanella loihica PV-4 around Shew_3540

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
4,228,477	-				+1.8
4,228,638	-		Shew_3539	0.35	+0.0
4,228,844	+		Shew_3539	0.74	+0.4
4,229,188	-				-0.4
4,229,199	-				+0.2
4,229,199	-				-0.1
4,229,326	+				+0.3
4,229,334	-				+0.0
4,229,334	-				+0.6
4,229,334	-				-0.8
4,229,334	-				+0.1
4,229,361	+				+0.7
4,229,383	+		Shew_3540	0.11	+0.4
4,229,397	+		Shew_3540	0.14	+1.2
4,229,448	-		Shew_3540	0.23	+0.5
4,229,530	+		Shew_3540	0.37	+0.6
4,229,729	-		Shew_3540	0.73	+0.6
4,229,753	+		Shew_3540	0.77	+0.5
4,229,759	+		Shew_3540	0.78	+0.4
4,229,826	+				-0.3
4,229,836	+				+0.7
4,229,844	-				+0.5
4,230,236	+		Shew_3541	0.44	-0.1
4,230,254	+		Shew_3541	0.48	-1.8
4,230,334	+		Shew_3541	0.65	-0.7
4,230,752	-		Shew_3542	0.57	-0.1
4,230,795	+		Shew_3542	0.67	-1.1