Strain Fitness in Shewanella loihica PV-4 around Shew_1235

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1234 and Shew_1235 are separated by 205 nucleotidesShew_1235 and Shew_1236 are separated by 67 nucleotidesShew_1236 and Shew_1237 are separated by 91 nucleotides Shew_1234: Shew_1234 - peptidase S41 (RefSeq), at 1,432,466 to 1,435,780 _1234 Shew_1235: Shew_1235 - hypothetical protein (RefSeq), at 1,435,986 to 1,436,885 _1235 Shew_1236: Shew_1236 - OsmC family protein (RefSeq), at 1,436,953 to 1,437,471 _1236 Shew_1237: Shew_1237 - hypothetical protein (RefSeq), at 1,437,563 to 1,437,841 _1237 Position (kb) 1435 1436 1437Strain fitness (log2 ratio) -1 0 1 2at 1435.479 kb on + strandat 1436.362 kb on + strand, within Shew_1235at 1436.375 kb on - strand, within Shew_1235at 1436.385 kb on - strand, within Shew_1235at 1436.952 kb on - strandat 1437.323 kb on + strand, within Shew_1236at 1437.406 kb on + strand, within Shew_1236

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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1,435,479 + +0.3
1,436,362 + Shew_1235 0.42 +0.1
1,436,375 - Shew_1235 0.43 +2.7
1,436,385 - Shew_1235 0.44 +1.2
1,436,952 - +0.4
1,437,323 + Shew_1236 0.71 +0.6
1,437,406 + Shew_1236 0.87 +0.1

Or see this region's nucleotide sequence