Strain Fitness in Shewanella loihica PV-4 around Shew_1204

Experiment: A22 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmazG and Shew_1204 are separated by 110 nucleotidesShew_1204 and Shew_1205 are separated by 131 nucleotides Shew_1203: mazG - nucleoside triphosphate pyrophosphohydrolase (RefSeq), at 1,397,665 to 1,398,462 mazG Shew_1204: Shew_1204 - CTP synthetase (RefSeq), at 1,398,573 to 1,400,210 _1204 Shew_1205: Shew_1205 - phosphopyruvate hydratase (RefSeq), at 1,400,342 to 1,401,637 _1205 Position (kb) 1398 1399 1400 1401Strain fitness (log2 ratio) -1 0 1 2at 1397.678 kb on - strandat 1397.692 kb on + strandat 1397.802 kb on + strand, within mazGat 1397.934 kb on + strand, within mazGat 1398.094 kb on + strand, within mazGat 1398.149 kb on + strand, within mazG

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
remove
1,397,678 - -0.4
1,397,692 + -0.3
1,397,802 + mazG Shew_1203 0.17 +0.1
1,397,934 + mazG Shew_1203 0.34 +0.0
1,398,094 + mazG Shew_1203 0.54 +0.0
1,398,149 + mazG Shew_1203 0.61 +2.0

Or see this region's nucleotide sequence