Strain Fitness in Shewanella loihica PV-4 around Shew_1201

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
1,393,205	+		Shew_1200	0.80	+1.7
1,393,234	-		Shew_1200	0.81	-1.9
1,393,513	-				-1.6
1,393,816	-				-0.2
1,393,860	-				-0.1
1,393,898	-				-0.9
1,394,062	+	rumA	Shew_1201	0.15	+0.6
1,394,229	-	rumA	Shew_1201	0.28	+0.3
1,394,535	-	rumA	Shew_1201	0.51	+0.3
1,394,642	-	rumA	Shew_1201	0.59	+0.6
1,394,863	+	rumA	Shew_1201	0.75	+0.2
1,395,105	+				-0.4
1,395,422	-				+2.1
1,395,616	+		Shew_1202	0.12	+1.7
1,395,698	+		Shew_1202	0.15	+1.6
1,395,714	+		Shew_1202	0.16	+3.0