Strain Fitness in Shewanella loihica PV-4 around Shew_1044

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
1,206,861	-		Shew_1042	0.56	-0.2
1,206,871	-		Shew_1042	0.57	-1.7
1,206,880	+		Shew_1042	0.58	-0.1
1,206,880	+		Shew_1042	0.58	-1.2
1,207,109	+		Shew_1042	0.77	-0.8
1,207,147	-		Shew_1042	0.80	-2.8
1,207,147	-		Shew_1042	0.80	-1.3
1,207,173	-		Shew_1042	0.83	+0.5
1,207,261	+				-0.0
1,207,747	+				+0.2
1,207,760	+				-1.0
1,207,865	-				+0.5
1,207,930	-	nhaR	Shew_1044	0.17	+0.7
1,208,162	-	nhaR	Shew_1044	0.42	+1.4
1,208,331	+	nhaR	Shew_1044	0.61	+1.3
1,208,830	+		Shew_1045	0.31	+0.4
1,209,010	-				-1.1
1,209,020	+				+0.4
1,209,121	-		Shew_1046	0.30	+0.5
1,209,177	+		Shew_1046	0.43	-0.7
1,209,191	+		Shew_1046	0.46	-0.0