Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0778 and Shew_0779 are separated by 409 nucleotides Shew_0779 and Shew_0780 overlap by 4 nucleotides
Shew_0778: Shew_0778 - hypothetical protein (RefSeq), at 889,300 to 889,731
_0778
Shew_0779: Shew_0779 - aspartate kinase III (RefSeq), at 890,141 to 891,499
_0779
Shew_0780: Shew_0780 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 891,496 to 892,602
_0780
Position (kb) 890
891
892 Strain fitness (log2 ratio) -1
0
1 at 889.245 kb on - strand at 889.245 kb on - strand at 889.245 kb on - strand at 889.245 kb on - strand at 889.355 kb on - strand, within Shew_0778 at 889.480 kb on + strand, within Shew_0778 at 889.534 kb on + strand, within Shew_0778 at 889.539 kb on + strand, within Shew_0778 at 889.655 kb on + strand, within Shew_0778 at 889.822 kb on + strand at 889.830 kb on - strand at 890.329 kb on + strand, within Shew_0779 at 890.370 kb on + strand, within Shew_0779 at 891.072 kb on - strand, within Shew_0779 at 891.171 kb on + strand, within Shew_0779 at 891.199 kb on + strand, within Shew_0779 at 891.283 kb on + strand, within Shew_0779 at 891.517 kb on - strand at 891.642 kb on - strand, within Shew_0780 at 891.965 kb on + strand, within Shew_0780 at 892.016 kb on + strand, within Shew_0780 at 892.038 kb on + strand, within Shew_0780 at 892.046 kb on - strand, within Shew_0780 at 892.084 kb on - strand, within Shew_0780 at 892.089 kb on - strand, within Shew_0780 at 892.167 kb on - strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.381 kb on + strand, within Shew_0780
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 889,245 - -0.1 889,245 - -0.7 889,245 - -0.8 889,245 - +0.1 889,355 - Shew_0778 0.13 -1.0 889,480 + Shew_0778 0.42 -0.2 889,534 + Shew_0778 0.54 -1.6 889,539 + Shew_0778 0.55 -0.0 889,655 + Shew_0778 0.82 -0.7 889,822 + -0.0 889,830 - -0.1 890,329 + Shew_0779 0.14 -0.3 890,370 + Shew_0779 0.17 -0.5 891,072 - Shew_0779 0.69 -1.6 891,171 + Shew_0779 0.76 -0.4 891,199 + Shew_0779 0.78 -0.1 891,283 + Shew_0779 0.84 -0.5 891,517 - -0.1 891,642 - Shew_0780 0.13 -0.1 891,965 + Shew_0780 0.42 -0.4 892,016 + Shew_0780 0.47 +0.2 892,038 + Shew_0780 0.49 +0.2 892,046 - Shew_0780 0.50 +0.9 892,084 - Shew_0780 0.53 -0.1 892,089 - Shew_0780 0.54 +0.5 892,167 - Shew_0780 0.61 -0.5 892,233 + Shew_0780 0.67 +0.1 892,233 + Shew_0780 0.67 -0.5 892,381 + Shew_0780 0.80 +1.3
Or see this region's nucleotide sequence