Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0756 and Shew_0757 are separated by 246 nucleotides Shew_0757 and Shew_0758 are separated by 188 nucleotides Shew_0758 and Shew_0759 are separated by 11 nucleotides
Shew_0756: Shew_0756 - hypothetical protein (RefSeq), at 858,135 to 858,875
_0756
Shew_0757: Shew_0757 - putative transcriptional regulator, CadC (RefSeq), at 859,122 to 859,577
_0757
Shew_0758: Shew_0758 - hypothetical protein (RefSeq), at 859,766 to 860,287
_0758
Shew_0759: Shew_0759 - cytochrome c, putative (RefSeq), at 860,299 to 861,120
_0759
Position (kb) 859
860 Strain fitness (log2 ratio) -1
0
1 at 858.583 kb on - strand, within Shew_0756 at 858.629 kb on + strand, within Shew_0756 at 859.227 kb on + strand, within Shew_0757 at 859.396 kb on - strand, within Shew_0757 at 859.474 kb on - strand, within Shew_0757 at 859.686 kb on - strand at 859.879 kb on - strand, within Shew_0758 at 859.879 kb on - strand, within Shew_0758 at 859.903 kb on - strand, within Shew_0758 at 860.139 kb on - strand, within Shew_0758 at 860.161 kb on + strand, within Shew_0758 at 860.460 kb on - strand, within Shew_0759 at 860.470 kb on - strand, within Shew_0759
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 858,583 - Shew_0756 0.60 -0.4 858,629 + Shew_0756 0.67 +1.0 859,227 + Shew_0757 0.23 +0.1 859,396 - Shew_0757 0.60 +0.9 859,474 - Shew_0757 0.77 +1.2 859,686 - +0.3 859,879 - Shew_0758 0.22 +0.1 859,879 - Shew_0758 0.22 +0.0 859,903 - Shew_0758 0.26 +0.5 860,139 - Shew_0758 0.71 +0.8 860,161 + Shew_0758 0.76 -0.2 860,460 - Shew_0759 0.20 +0.2 860,470 - Shew_0759 0.21 -0.2
Or see this region's nucleotide sequence