Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0704 and Shew_0705 are separated by 304 nucleotides Shew_0705 and Shew_0706 are separated by 100 nucleotides Shew_0706 and Shew_0707 are separated by 142 nucleotides
Shew_0704: Shew_0704 - hypothetical protein (RefSeq), at 798,599 to 799,195
_0704
Shew_0705: Shew_0705 - hypothetical protein (RefSeq), at 799,500 to 800,441
_0705
Shew_0706: Shew_0706 - short-chain dehydrogenase/reductase SDR (RefSeq), at 800,542 to 801,219
_0706
Shew_0707: Shew_0707 - YbaK/prolyl-tRNA synthetase associated region (RefSeq), at 801,362 to 801,841
_0707
Position (kb) 799
800
801 Strain fitness (log2 ratio) -1
0
1 at 798.503 kb on + strand at 798.526 kb on + strand at 798.677 kb on + strand, within Shew_0704 at 798.701 kb on - strand, within Shew_0704 at 798.861 kb on - strand, within Shew_0704 at 799.040 kb on - strand, within Shew_0704 at 799.040 kb on - strand, within Shew_0704 at 799.433 kb on + strand at 799.433 kb on + strand at 799.530 kb on - strand at 799.546 kb on + strand at 799.855 kb on - strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.944 kb on - strand, within Shew_0705 at 800.062 kb on + strand, within Shew_0705 at 800.306 kb on + strand, within Shew_0705 at 800.306 kb on + strand, within Shew_0705 at 800.372 kb on + strand at 800.522 kb on - strand at 800.525 kb on + strand at 800.525 kb on + strand at 800.530 kb on + strand at 800.533 kb on - strand at 800.540 kb on + strand at 800.809 kb on - strand, within Shew_0706 at 800.982 kb on + strand, within Shew_0706 at 800.982 kb on + strand, within Shew_0706 at 801.240 kb on + strand at 801.240 kb on + strand at 801.248 kb on - strand at 801.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 798,503 + -0.2 798,526 + +0.1 798,677 + Shew_0704 0.13 +0.0 798,701 - Shew_0704 0.17 +0.5 798,861 - Shew_0704 0.44 +0.0 799,040 - Shew_0704 0.74 -0.2 799,040 - Shew_0704 0.74 +0.2 799,433 + +0.4 799,433 + -1.2 799,530 - +0.3 799,546 + +0.2 799,855 - Shew_0705 0.38 +0.1 799,936 + Shew_0705 0.46 +0.3 799,936 + Shew_0705 0.46 +0.1 799,936 + Shew_0705 0.46 +1.4 799,936 + Shew_0705 0.46 +0.3 799,944 - Shew_0705 0.47 +1.6 800,062 + Shew_0705 0.60 +0.6 800,306 + Shew_0705 0.86 +0.3 800,306 + Shew_0705 0.86 +0.3 800,372 + +0.8 800,522 - -1.1 800,525 + -0.4 800,525 + +0.5 800,530 + +0.2 800,533 - -0.4 800,540 + +0.2 800,809 - Shew_0706 0.39 +0.7 800,982 + Shew_0706 0.65 -0.4 800,982 + Shew_0706 0.65 -0.1 801,240 + +0.7 801,240 + +0.4 801,248 - +0.6 801,248 - -0.0
Or see this region's nucleotide sequence