Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0685 and Shew_0686 are separated by 88 nucleotides Shew_0686 and Shew_0687 are separated by 184 nucleotides Shew_0687 and Shew_0688 are separated by 162 nucleotides
Shew_0685: Shew_0685 - hypothetical protein (RefSeq), at 779,359 to 780,066
_0685
Shew_0686: Shew_0686 - DSBA oxidoreductase (RefSeq), at 780,155 to 780,817
_0686
Shew_0687: Shew_0687 - heat shock protein DnaJ domain-containing protein (RefSeq), at 781,002 to 781,661
_0687
Shew_0688: Shew_0688 - dihydropteridine reductase (RefSeq), at 781,824 to 782,477
_0688
Position (kb) 781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 780.547 kb on + strand, within Shew_0686 at 780.683 kb on - strand, within Shew_0686 at 780.691 kb on + strand, within Shew_0686 at 780.864 kb on - strand at 781.023 kb on + strand at 781.031 kb on - strand at 781.154 kb on + strand, within Shew_0687 at 781.258 kb on + strand, within Shew_0687 at 781.358 kb on + strand, within Shew_0687 at 781.492 kb on - strand, within Shew_0687 at 781.742 kb on - strand at 781.777 kb on + strand at 781.907 kb on + strand, within Shew_0688 at 782.037 kb on - strand, within Shew_0688 at 782.037 kb on - strand, within Shew_0688 at 782.440 kb on - strand at 782.440 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 780,547 + Shew_0686 0.59 +0.4 780,683 - Shew_0686 0.80 +0.3 780,691 + Shew_0686 0.81 -1.5 780,864 - -0.2 781,023 + -0.1 781,031 - +0.5 781,154 + Shew_0687 0.23 -0.7 781,258 + Shew_0687 0.39 +0.3 781,358 + Shew_0687 0.54 -1.2 781,492 - Shew_0687 0.74 -2.9 781,742 - +0.1 781,777 + +0.6 781,907 + Shew_0688 0.13 -0.3 782,037 - Shew_0688 0.33 +0.7 782,037 - Shew_0688 0.33 +0.3 782,440 - -0.8 782,440 + +0.3
Or see this region's nucleotide sequence