Strain Fitness in Shewanella loihica PV-4 around Shew_0495

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0494 and Shew_0495 are separated by 184 nucleotidesShew_0495 and Shew_0496 are separated by 354 nucleotides Shew_0494: Shew_0494 - hypothetical protein (RefSeq), at 551,047 to 551,799 _0494 Shew_0495: Shew_0495 - hypothetical protein (RefSeq), at 551,984 to 552,685 _0495 Shew_0496: Shew_0496 - amino acid carrier protein (RefSeq), at 553,040 to 554,413 _0496 Position (kb) 551 552 553Strain fitness (log2 ratio) -2 -1 0 1at 551.301 kb on + strand, within Shew_0494at 551.302 kb on + strand, within Shew_0494at 551.505 kb on + strand, within Shew_0494at 551.722 kb on + strand, within Shew_0494at 551.722 kb on + strand, within Shew_0494at 551.871 kb on + strandat 551.871 kb on + strandat 551.879 kb on - strandat 551.879 kb on - strandat 552.284 kb on - strand, within Shew_0495at 552.763 kb on - strandat 553.116 kb on - strandat 553.123 kb on + strandat 553.344 kb on - strand, within Shew_0496at 553.354 kb on - strand, within Shew_0496at 553.458 kb on + strand, within Shew_0496at 553.580 kb on + strand, within Shew_0496

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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551,301 + Shew_0494 0.34 +1.2
551,302 + Shew_0494 0.34 +1.0
551,505 + Shew_0494 0.61 -0.8
551,722 + Shew_0494 0.90 -0.3
551,722 + Shew_0494 0.90 -0.1
551,871 + -0.9
551,871 + -0.2
551,879 - -0.3
551,879 - -0.2
552,284 - Shew_0495 0.43 -1.8
552,763 - +0.3
553,116 - +0.4
553,123 + -1.7
553,344 - Shew_0496 0.22 +0.5
553,354 - Shew_0496 0.23 -0.1
553,458 + Shew_0496 0.30 -0.1
553,580 + Shew_0496 0.39 +0.3

Or see this region's nucleotide sequence