Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0360 and Shew_0361 are separated by 167 nucleotides Shew_0361 and Shew_0362 are separated by 28 nucleotides Shew_0362 and Shew_0363 are separated by 117 nucleotides Shew_0363 and Shew_0364 are separated by 11 nucleotides
Shew_0360: Shew_0360 - UbiD family decarboxylase (RefSeq), at 408,711 to 410,192
_0360
Shew_0361: Shew_0361 - hypothetical protein (RefSeq), at 410,360 to 410,836
_0361
Shew_0362: Shew_0362 - signal peptidase I (RefSeq), at 410,865 to 411,581
_0362
Shew_0363: Shew_0363 - nucleotidase (RefSeq), at 411,699 to 412,376
_0363
Shew_0364: Shew_0364 - MshA, mannose-sensitive haemaglutinin (RefSeq), at 412,388 to 412,879
_0364
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1 at 410.378 kb on + strand at 410.436 kb on - strand, within Shew_0361 at 410.658 kb on + strand, within Shew_0361 at 410.659 kb on + strand, within Shew_0361 at 410.666 kb on - strand, within Shew_0361 at 410.756 kb on - strand, within Shew_0361 at 410.766 kb on - strand, within Shew_0361 at 410.791 kb on - strand at 411.424 kb on - strand, within Shew_0362 at 411.654 kb on + strand at 411.678 kb on + strand at 411.680 kb on - strand at 412.255 kb on - strand, within Shew_0363 at 412.434 kb on - strand at 412.434 kb on - strand at 412.441 kb on - strand, within Shew_0364
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 410,378 + +1.6 410,436 - Shew_0361 0.16 +0.3 410,658 + Shew_0361 0.62 -1.8 410,659 + Shew_0361 0.63 +0.2 410,666 - Shew_0361 0.64 -0.5 410,756 - Shew_0361 0.83 -0.6 410,766 - Shew_0361 0.85 -0.4 410,791 - +0.5 411,424 - Shew_0362 0.78 -0.2 411,654 + -0.2 411,678 + -1.0 411,680 - -0.4 412,255 - Shew_0363 0.82 +0.1 412,434 - -0.3 412,434 - +0.0 412,441 - Shew_0364 0.11 +0.2
Or see this region's nucleotide sequence