Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0300 and Shew_0301 are separated by 237 nucleotides Shew_0301 and Shew_0302 are separated by 74 nucleotides Shew_0302 and Shew_0303 are separated by 106 nucleotides
Shew_0300: Shew_0300 - sodium:neurotransmitter symporter (RefSeq), at 321,953 to 323,311
_0300
Shew_0301: Shew_0301 - AsnC family transcriptional regulator (RefSeq), at 323,549 to 324,049
_0301
Shew_0302: Shew_0302 - phosphoesterase, PA-phosphatase related (RefSeq), at 324,124 to 324,891
_0302
Shew_0303: Shew_0303 - hypothetical protein (RefSeq), at 324,998 to 326,350
_0303
Position (kb) 323
324
325 Strain fitness (log2 ratio) -1
0
1 at 322.664 kb on + strand, within Shew_0300 at 322.672 kb on - strand, within Shew_0300 at 322.945 kb on + strand, within Shew_0300 at 322.997 kb on + strand, within Shew_0300 at 323.139 kb on + strand, within Shew_0300 at 323.177 kb on + strand at 323.180 kb on - strand at 323.220 kb on + strand at 323.334 kb on - strand at 323.334 kb on - strand at 323.510 kb on + strand at 323.587 kb on + strand at 323.592 kb on - strand at 323.632 kb on - strand, within Shew_0301 at 324.066 kb on + strand at 324.244 kb on + strand, within Shew_0302 at 324.271 kb on + strand, within Shew_0302 at 324.295 kb on + strand, within Shew_0302 at 324.334 kb on - strand, within Shew_0302 at 324.603 kb on + strand, within Shew_0302 at 324.713 kb on + strand, within Shew_0302 at 324.721 kb on - strand, within Shew_0302 at 324.744 kb on - strand, within Shew_0302 at 324.839 kb on + strand at 324.947 kb on - strand at 325.019 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 322,664 + Shew_0300 0.52 +0.2 322,672 - Shew_0300 0.53 +0.0 322,945 + Shew_0300 0.73 +0.3 322,997 + Shew_0300 0.77 -0.7 323,139 + Shew_0300 0.87 +0.5 323,177 + +0.1 323,180 - -0.2 323,220 + +0.4 323,334 - -0.1 323,334 - +0.5 323,510 + +0.5 323,587 + -0.4 323,592 - +0.5 323,632 - Shew_0301 0.17 -1.2 324,066 + +0.2 324,244 + Shew_0302 0.16 +0.1 324,271 + Shew_0302 0.19 -0.3 324,295 + Shew_0302 0.22 -0.6 324,334 - Shew_0302 0.27 -0.2 324,603 + Shew_0302 0.62 -0.3 324,713 + Shew_0302 0.77 -1.1 324,721 - Shew_0302 0.78 -0.6 324,744 - Shew_0302 0.81 -0.3 324,839 + -1.1 324,947 - +0.0 325,019 - +0.4
Or see this region's nucleotide sequence