Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0274 and Shew_0275 are separated by 41 nucleotides Shew_0275 and Shew_0276 are separated by 5 nucleotides Shew_0276 and Shew_0277 are separated by 331 nucleotides
Shew_0274: Shew_0274 - hypothetical protein (RefSeq), at 291,207 to 292,340
_0274
Shew_0275: Shew_0275 - tetraheme cytochrome c, putative (RefSeq), at 292,382 to 292,750
_0275
Shew_0276: Shew_0276 - flavocytochrome c (RefSeq), at 292,756 to 294,273
_0276
Shew_0277: Shew_0277 - TetR family transcriptional regulator (RefSeq), at 294,605 to 295,390
_0277
Position (kb) 292
293
294
295 Strain fitness (log2 ratio) -1
0
1 at 291.873 kb on + strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.881 kb on - strand, within Shew_0274 at 291.881 kb on - strand, within Shew_0274 at 292.429 kb on - strand, within Shew_0275 at 292.711 kb on + strand, within Shew_0275 at 292.762 kb on - strand at 292.762 kb on - strand at 292.877 kb on + strand at 292.973 kb on - strand, within Shew_0276 at 292.973 kb on - strand, within Shew_0276 at 293.222 kb on + strand, within Shew_0276 at 293.276 kb on + strand, within Shew_0276 at 293.396 kb on - strand, within Shew_0276 at 293.525 kb on - strand, within Shew_0276 at 293.530 kb on - strand, within Shew_0276 at 293.604 kb on - strand, within Shew_0276 at 293.604 kb on - strand, within Shew_0276 at 293.649 kb on + strand, within Shew_0276 at 293.649 kb on + strand, within Shew_0276 at 293.657 kb on - strand, within Shew_0276 at 293.664 kb on + strand, within Shew_0276 at 293.745 kb on + strand, within Shew_0276 at 293.753 kb on - strand, within Shew_0276 at 294.134 kb on - strand at 294.202 kb on + strand at 294.301 kb on + strand at 294.378 kb on + strand at 294.434 kb on + strand at 294.443 kb on - strand at 294.722 kb on + strand, within Shew_0277 at 294.932 kb on - strand, within Shew_0277 at 294.953 kb on - strand, within Shew_0277 at 294.955 kb on - strand, within Shew_0277 at 294.964 kb on + strand, within Shew_0277 at 295.250 kb on - strand, within Shew_0277
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 291,873 + Shew_0274 0.59 +0.8 291,873 + Shew_0274 0.59 -0.8 291,873 + Shew_0274 0.59 -0.5 291,881 - Shew_0274 0.59 -0.3 291,881 - Shew_0274 0.59 -0.7 292,429 - Shew_0275 0.13 -0.2 292,711 + Shew_0275 0.89 -0.0 292,762 - +0.3 292,762 - -0.2 292,877 + -0.7 292,973 - Shew_0276 0.14 +0.1 292,973 - Shew_0276 0.14 -0.2 293,222 + Shew_0276 0.31 -0.2 293,276 + Shew_0276 0.34 -0.6 293,396 - Shew_0276 0.42 -0.0 293,525 - Shew_0276 0.51 -0.4 293,530 - Shew_0276 0.51 -0.3 293,604 - Shew_0276 0.56 -0.9 293,604 - Shew_0276 0.56 -0.7 293,649 + Shew_0276 0.59 +0.1 293,649 + Shew_0276 0.59 -0.7 293,657 - Shew_0276 0.59 +0.0 293,664 + Shew_0276 0.60 +0.2 293,745 + Shew_0276 0.65 -0.4 293,753 - Shew_0276 0.66 +0.3 294,134 - -0.5 294,202 + -0.0 294,301 + +0.1 294,378 + +0.1 294,434 + -0.2 294,443 - +0.5 294,722 + Shew_0277 0.15 +0.0 294,932 - Shew_0277 0.42 -0.1 294,953 - Shew_0277 0.44 +0.2 294,955 - Shew_0277 0.45 +0.3 294,964 + Shew_0277 0.46 -0.7 295,250 - Shew_0277 0.82 +0.0
Or see this region's nucleotide sequence