Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0271 and Shew_0272 are separated by 52 nucleotides Shew_0272 and Shew_0273 are separated by 171 nucleotides Shew_0273 and Shew_0274 are separated by 167 nucleotides
Shew_0271: Shew_0271 - phospholipase (RefSeq), at 287,658 to 289,007
_0271
Shew_0272: Shew_0272 - cupin 2 domain-containing protein (RefSeq), at 289,060 to 289,803
_0272
Shew_0273: Shew_0273 - hypothetical protein (RefSeq), at 289,975 to 291,039
_0273
Shew_0274: Shew_0274 - hypothetical protein (RefSeq), at 291,207 to 292,340
_0274
Position (kb) 289
290
291
292 Strain fitness (log2 ratio) -1
0
1
2 at 289.103 kb on - strand at 289.135 kb on + strand, within Shew_0272 at 289.335 kb on + strand, within Shew_0272 at 289.336 kb on + strand, within Shew_0272 at 289.431 kb on + strand, within Shew_0272 at 289.644 kb on + strand, within Shew_0272 at 290.356 kb on - strand, within Shew_0273 at 290.399 kb on - strand, within Shew_0273 at 290.507 kb on + strand, within Shew_0273 at 290.551 kb on - strand, within Shew_0273 at 290.601 kb on + strand, within Shew_0273 at 290.668 kb on + strand, within Shew_0273 at 290.696 kb on - strand, within Shew_0273 at 290.710 kb on - strand, within Shew_0273 at 290.809 kb on - strand, within Shew_0273 at 290.847 kb on - strand, within Shew_0273 at 290.964 kb on + strand at 290.964 kb on + strand at 290.972 kb on - strand at 291.057 kb on + strand at 291.440 kb on + strand, within Shew_0274 at 291.511 kb on + strand, within Shew_0274 at 291.530 kb on + strand, within Shew_0274 at 291.633 kb on + strand, within Shew_0274 at 291.701 kb on - strand, within Shew_0274 at 291.748 kb on - strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.881 kb on - strand, within Shew_0274 at 291.881 kb on - strand, within Shew_0274
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 289,103 - +0.4 289,135 + Shew_0272 0.10 +0.2 289,335 + Shew_0272 0.37 -1.3 289,336 + Shew_0272 0.37 -0.6 289,431 + Shew_0272 0.50 -0.3 289,644 + Shew_0272 0.78 +0.1 290,356 - Shew_0273 0.36 +0.1 290,399 - Shew_0273 0.40 -0.1 290,507 + Shew_0273 0.50 -1.3 290,551 - Shew_0273 0.54 +0.6 290,601 + Shew_0273 0.59 +0.3 290,668 + Shew_0273 0.65 -0.3 290,696 - Shew_0273 0.68 +0.1 290,710 - Shew_0273 0.69 -0.1 290,809 - Shew_0273 0.78 -0.7 290,847 - Shew_0273 0.82 -0.2 290,964 + +0.2 290,964 + -0.5 290,972 - +0.5 291,057 + +0.6 291,440 + Shew_0274 0.21 +1.7 291,511 + Shew_0274 0.27 -0.1 291,530 + Shew_0274 0.28 -0.7 291,633 + Shew_0274 0.38 +0.4 291,701 - Shew_0274 0.44 +0.6 291,748 - Shew_0274 0.48 +2.2 291,873 + Shew_0274 0.59 +0.8 291,873 + Shew_0274 0.59 -0.8 291,873 + Shew_0274 0.59 -0.5 291,881 - Shew_0274 0.59 -0.3 291,881 - Shew_0274 0.59 -0.7
Or see this region's nucleotide sequence