Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0118 and Shew_0119 overlap by 1 nucleotides Shew_0119 and Shew_0120 are separated by 172 nucleotides Shew_0120 and Shew_0121 are separated by 40 nucleotides Shew_0121 and Shew_0122 are separated by 15 nucleotides
Shew_0118: Shew_0118 - cytochrome oxidase assembly (RefSeq), at 129,295 to 130,278
_0118
Shew_0119: Shew_0119 - hypothetical protein (RefSeq), at 130,278 to 130,829
_0119
Shew_0120: Shew_0120 - hypothetical protein (RefSeq), at 131,002 to 131,757
_0120
Shew_0121: Shew_0121 - hypothetical protein (RefSeq), at 131,798 to 131,974
_0121
Shew_0122: Shew_0122 - cytochrome c oxidase, subunit III (RefSeq), at 131,990 to 132,865
_0122
Position (kb) 131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 130.029 kb on + strand, within Shew_0118 at 130.201 kb on - strand at 130.244 kb on - strand at 130.246 kb on - strand at 130.256 kb on - strand at 130.293 kb on - strand at 130.485 kb on - strand, within Shew_0119 at 130.509 kb on - strand, within Shew_0119 at 130.536 kb on + strand, within Shew_0119 at 130.616 kb on + strand, within Shew_0119 at 130.646 kb on - strand, within Shew_0119 at 131.161 kb on + strand, within Shew_0120 at 131.258 kb on - strand, within Shew_0120 at 131.404 kb on - strand, within Shew_0120 at 131.452 kb on - strand, within Shew_0120 at 131.803 kb on - strand at 131.898 kb on + strand, within Shew_0121 at 131.949 kb on - strand, within Shew_0121 at 132.204 kb on + strand, within Shew_0122 at 132.244 kb on - strand, within Shew_0122 at 132.280 kb on + strand, within Shew_0122 at 132.343 kb on - strand, within Shew_0122 at 132.397 kb on + strand, within Shew_0122 at 132.410 kb on - strand, within Shew_0122 at 132.414 kb on + strand, within Shew_0122 at 132.422 kb on - strand, within Shew_0122 at 132.489 kb on - strand, within Shew_0122 at 132.521 kb on + strand, within Shew_0122 at 132.521 kb on + strand, within Shew_0122 at 132.545 kb on + strand, within Shew_0122 at 132.639 kb on - strand, within Shew_0122 at 132.669 kb on + strand, within Shew_0122 at 132.680 kb on + strand, within Shew_0122 at 132.737 kb on + strand, within Shew_0122
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 130,029 + Shew_0118 0.75 -0.7 130,201 - +0.6 130,244 - +0.1 130,246 - -0.4 130,256 - -0.2 130,293 - -0.1 130,485 - Shew_0119 0.38 +0.1 130,509 - Shew_0119 0.42 -0.4 130,536 + Shew_0119 0.47 +0.6 130,616 + Shew_0119 0.61 +0.6 130,646 - Shew_0119 0.67 -0.1 131,161 + Shew_0120 0.21 -0.4 131,258 - Shew_0120 0.34 -0.1 131,404 - Shew_0120 0.53 -0.9 131,452 - Shew_0120 0.60 +0.1 131,803 - -0.6 131,898 + Shew_0121 0.56 -0.3 131,949 - Shew_0121 0.85 +1.3 132,204 + Shew_0122 0.24 -0.5 132,244 - Shew_0122 0.29 -0.7 132,280 + Shew_0122 0.33 -0.4 132,343 - Shew_0122 0.40 +0.8 132,397 + Shew_0122 0.46 +0.0 132,410 - Shew_0122 0.48 -0.4 132,414 + Shew_0122 0.48 -0.1 132,422 - Shew_0122 0.49 +0.5 132,489 - Shew_0122 0.57 -2.8 132,521 + Shew_0122 0.61 -1.4 132,521 + Shew_0122 0.61 +0.6 132,545 + Shew_0122 0.63 +1.1 132,639 - Shew_0122 0.74 +0.1 132,669 + Shew_0122 0.78 +0.0 132,680 + Shew_0122 0.79 +0.9 132,737 + Shew_0122 0.85 -0.4
Or see this region's nucleotide sequence