Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0111 and Shew_0112 are separated by 22 nucleotides Shew_0112 and Shew_0113 are separated by 28 nucleotides Shew_0113 and Shew_0114 are separated by 21 nucleotides Shew_0114 and Shew_0115 overlap by 4 nucleotides Shew_0115 and Shew_0116 are separated by 163 nucleotides
Shew_0111: Shew_0111 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 121,633 to 124,227
_0111
Shew_0112: Shew_0112 - CheW protein (RefSeq), at 124,250 to 124,807
_0112
Shew_0113: Shew_0113 - CheA signal transduction histidine kinase (RefSeq), at 124,836 to 126,896
_0113
Shew_0114: Shew_0114 - response regulator receiver protein (RefSeq), at 126,918 to 127,280
_0114
Shew_0115: Shew_0115 - hypothetical protein (RefSeq), at 127,277 to 127,576
_0115
Shew_0116: Shew_0116 - electron transport protein SCO1/SenC (RefSeq), at 127,740 to 128,375
_0116
Position (kb) 124
125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 123.898 kb on - strand, within Shew_0111 at 123.898 kb on - strand, within Shew_0111 at 123.898 kb on - strand, within Shew_0111 at 123.933 kb on + strand, within Shew_0111 at 123.935 kb on + strand, within Shew_0111 at 124.276 kb on - strand at 124.400 kb on - strand, within Shew_0112 at 124.439 kb on + strand, within Shew_0112 at 124.454 kb on - strand, within Shew_0112 at 124.733 kb on + strand, within Shew_0112 at 125.225 kb on + strand, within Shew_0113 at 125.225 kb on + strand, within Shew_0113 at 125.225 kb on + strand, within Shew_0113 at 125.227 kb on + strand, within Shew_0113 at 125.227 kb on + strand, within Shew_0113 at 125.233 kb on - strand, within Shew_0113 at 125.235 kb on - strand, within Shew_0113 at 125.308 kb on + strand, within Shew_0113 at 125.308 kb on + strand, within Shew_0113 at 125.316 kb on - strand, within Shew_0113 at 125.316 kb on - strand, within Shew_0113 at 125.338 kb on - strand, within Shew_0113 at 125.408 kb on - strand, within Shew_0113 at 125.526 kb on + strand, within Shew_0113 at 125.651 kb on - strand, within Shew_0113 at 125.656 kb on - strand, within Shew_0113 at 125.847 kb on + strand, within Shew_0113 at 126.187 kb on + strand, within Shew_0113 at 126.223 kb on + strand, within Shew_0113 at 126.485 kb on + strand, within Shew_0113 at 126.551 kb on + strand, within Shew_0113 at 126.842 kb on + strand at 126.921 kb on + strand at 126.921 kb on + strand at 126.974 kb on - strand, within Shew_0114 at 127.124 kb on + strand, within Shew_0114 at 127.207 kb on - strand, within Shew_0114 at 127.228 kb on - strand, within Shew_0114 at 127.350 kb on - strand, within Shew_0115 at 127.817 kb on + strand, within Shew_0116 at 127.874 kb on - strand, within Shew_0116
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 123,898 - Shew_0111 0.87 -0.4 123,898 - Shew_0111 0.87 -0.2 123,898 - Shew_0111 0.87 -0.3 123,933 + Shew_0111 0.89 -0.7 123,935 + Shew_0111 0.89 -0.1 124,276 - +0.2 124,400 - Shew_0112 0.27 +0.2 124,439 + Shew_0112 0.34 -0.9 124,454 - Shew_0112 0.37 -0.3 124,733 + Shew_0112 0.87 -0.1 125,225 + Shew_0113 0.19 +0.9 125,225 + Shew_0113 0.19 +0.4 125,225 + Shew_0113 0.19 -0.1 125,227 + Shew_0113 0.19 -0.9 125,227 + Shew_0113 0.19 +0.1 125,233 - Shew_0113 0.19 +0.3 125,235 - Shew_0113 0.19 -0.1 125,308 + Shew_0113 0.23 -0.7 125,308 + Shew_0113 0.23 -0.9 125,316 - Shew_0113 0.23 -2.1 125,316 - Shew_0113 0.23 -0.1 125,338 - Shew_0113 0.24 +0.4 125,408 - Shew_0113 0.28 +0.0 125,526 + Shew_0113 0.33 -0.8 125,651 - Shew_0113 0.40 +0.8 125,656 - Shew_0113 0.40 -0.1 125,847 + Shew_0113 0.49 +0.1 126,187 + Shew_0113 0.66 -0.6 126,223 + Shew_0113 0.67 -1.8 126,485 + Shew_0113 0.80 -0.5 126,551 + Shew_0113 0.83 -1.4 126,842 + -0.5 126,921 + -0.6 126,921 + +0.3 126,974 - Shew_0114 0.15 +3.6 127,124 + Shew_0114 0.57 +1.4 127,207 - Shew_0114 0.80 +0.2 127,228 - Shew_0114 0.85 -0.7 127,350 - Shew_0115 0.24 +0.2 127,817 + Shew_0116 0.12 -0.6 127,874 - Shew_0116 0.21 +0.8
Or see this region's nucleotide sequence