Strain Fitness in Dechlorosoma suillum PS around Dsui_3534

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3532 and Dsui_3533 overlap by 1 nucleotidesDsui_3533 and Dsui_3534 are separated by 97 nucleotidesDsui_3534 and Dsui_3535 overlap by 4 nucleotides Dsui_3532: Dsui_3532 - Protein of unknown function (DUF3106), at 3,797,938 to 3,798,663 _3532 Dsui_3533: Dsui_3533 - putative membrane protein/domain protein, at 3,798,663 to 3,799,142 _3533 Dsui_3534: Dsui_3534 - putative permease, at 3,799,240 to 3,800,346 _3534 Dsui_3535: Dsui_3535 - putative permease, at 3,800,343 to 3,801,428 _3535 Position (kb) 3799 3800 3801Strain fitness (log2 ratio) -1 0 1at 3798.249 kb on + strand, within Dsui_3532at 3798.366 kb on + strand, within Dsui_3532at 3798.374 kb on - strand, within Dsui_3532at 3798.478 kb on - strand, within Dsui_3532at 3798.532 kb on + strand, within Dsui_3532at 3798.569 kb on - strand, within Dsui_3532at 3798.684 kb on + strandat 3798.715 kb on + strand, within Dsui_3533at 3798.750 kb on + strand, within Dsui_3533at 3798.856 kb on + strand, within Dsui_3533at 3798.927 kb on + strand, within Dsui_3533at 3798.928 kb on + strand, within Dsui_3533at 3799.017 kb on + strand, within Dsui_3533at 3799.017 kb on + strand, within Dsui_3533at 3799.061 kb on - strand, within Dsui_3533at 3799.066 kb on - strand, within Dsui_3533

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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3,798,249 + Dsui_3532 0.43 +0.2
3,798,366 + Dsui_3532 0.59 -1.2
3,798,374 - Dsui_3532 0.60 -0.2
3,798,478 - Dsui_3532 0.74 -0.7
3,798,532 + Dsui_3532 0.82 -0.4
3,798,569 - Dsui_3532 0.87 +0.3
3,798,684 + -0.4
3,798,715 + Dsui_3533 0.11 +0.1
3,798,750 + Dsui_3533 0.18 -0.8
3,798,856 + Dsui_3533 0.40 +0.2
3,798,927 + Dsui_3533 0.55 -0.2
3,798,928 + Dsui_3533 0.55 -0.0
3,799,017 + Dsui_3533 0.74 +0.2
3,799,017 + Dsui_3533 0.74 -1.2
3,799,061 - Dsui_3533 0.83 -0.1
3,799,066 - Dsui_3533 0.84 -0.9

Or see this region's nucleotide sequence