Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3507 and Dsui_3508 are separated by 146 nucleotides Dsui_3508 and Dsui_3509 are separated by 47 nucleotides Dsui_3509 and Dsui_3510 are separated by 40 nucleotides
Dsui_3507: Dsui_3507 - ring-hydroxylating dioxygenase, large terminal subunit, at 3,771,930 to 3,773,039
_3507
Dsui_3508: Dsui_3508 - exodeoxyribonuclease VII, small subunit, at 3,773,186 to 3,773,452
_3508
Dsui_3509: Dsui_3509 - geranylgeranyl pyrophosphate synthase, at 3,773,500 to 3,774,408
_3509
Dsui_3510: Dsui_3510 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,774,449 to 3,776,305
_3510
Position (kb)
3773
3774 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3772.232 kb on - strand, within Dsui_3507 at 3772.333 kb on - strand, within Dsui_3507 at 3772.346 kb on - strand, within Dsui_3507 at 3772.361 kb on + strand at 3772.367 kb on + strand at 3772.393 kb on + strand, within Dsui_3507 at 3772.429 kb on - strand, within Dsui_3507 at 3772.477 kb on + strand at 3772.486 kb on - strand, within Dsui_3507 at 3772.592 kb on + strand, within Dsui_3507 at 3772.605 kb on - strand, within Dsui_3507 at 3772.618 kb on + strand, within Dsui_3507 at 3772.669 kb on - strand, within Dsui_3507 at 3772.696 kb on + strand, within Dsui_3507 at 3772.754 kb on + strand, within Dsui_3507 at 3772.765 kb on + strand at 3772.767 kb on + strand at 3772.870 kb on + strand, within Dsui_3507 at 3772.878 kb on + strand, within Dsui_3507 at 3772.928 kb on + strand, within Dsui_3507 at 3772.938 kb on + strand at 3772.947 kb on - strand at 3772.997 kb on - strand at 3773.008 kb on - strand at 3773.020 kb on - strand at 3773.040 kb on + strand at 3773.040 kb on + strand at 3773.048 kb on - strand at 3773.048 kb on - strand at 3773.048 kb on - strand at 3773.123 kb on - strand at 3773.192 kb on + strand at 3773.225 kb on + strand, within Dsui_3508 at 3773.346 kb on + strand, within Dsui_3508 at 3773.364 kb on - strand at 3773.429 kb on + strand at 3773.447 kb on + strand at 3773.447 kb on + strand at 3773.465 kb on + strand at 3774.379 kb on + strand at 3774.384 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 3,772,232 - Dsui_3507 0.27 -0.2 3,772,333 - Dsui_3507 0.36 -0.5 3,772,346 - Dsui_3507 0.37 -0.5 3,772,361 + +2.2 3,772,367 + -0.1 3,772,393 + Dsui_3507 0.42 -0.9 3,772,429 - Dsui_3507 0.45 -0.2 3,772,477 + +1.2 3,772,486 - Dsui_3507 0.50 -0.5 3,772,592 + Dsui_3507 0.60 -0.7 3,772,605 - Dsui_3507 0.61 +0.1 3,772,618 + Dsui_3507 0.62 +1.2 3,772,669 - Dsui_3507 0.67 -0.6 3,772,696 + Dsui_3507 0.69 -0.9 3,772,754 + Dsui_3507 0.74 +0.3 3,772,765 + +0.2 3,772,767 + +1.6 3,772,870 + Dsui_3507 0.85 -1.1 3,772,878 + Dsui_3507 0.85 -1.1 3,772,928 + Dsui_3507 0.90 -0.8 3,772,938 + -0.5 3,772,947 - +0.0 3,772,997 - -0.2 3,773,008 - -0.3 3,773,020 - -0.2 3,773,040 + -0.4 3,773,040 + +0.4 3,773,048 - -0.0 3,773,048 - +0.4 3,773,048 - -0.0 3,773,123 - -0.7 3,773,192 + -0.9 3,773,225 + Dsui_3508 0.15 -0.4 3,773,346 + Dsui_3508 0.60 -0.4 3,773,364 - -0.1 3,773,429 + +0.8 3,773,447 + +2.2 3,773,447 + -1.2 3,773,465 + -1.1 3,774,379 + +1.6 3,774,384 + +3.2
Or see this region's nucleotide sequence