Strain Fitness in Dechlorosoma suillum PS around Dsui_3254

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3251 and Dsui_3252 are separated by 48 nucleotidesDsui_3252 and Dsui_3253 are separated by 290 nucleotidesDsui_3253 and Dsui_3254 are separated by 146 nucleotidesDsui_3254 and Dsui_3255 are separated by 171 nucleotides Dsui_3251: Dsui_3251 - ATPase involved in chromosome partitioning, at 3,492,166 to 3,492,930 _3251 Dsui_3252: Dsui_3252 - hypothetical protein, at 3,492,979 to 3,493,197 _3252 Dsui_3253: Dsui_3253 - Protein of unknown function (DUF3579), at 3,493,488 to 3,493,781 _3253 Dsui_3254: Dsui_3254 - ribosomal protein S20, at 3,493,928 to 3,494,194 _3254 Dsui_3255: Dsui_3255 - integral membrane protein MviN, at 3,494,366 to 3,495,910 _3255 Position (kb) 3493 3494 3495Strain fitness (log2 ratio) -1 0 1at 3492.958 kb on + strandat 3493.005 kb on + strand, within Dsui_3252at 3493.005 kb on + strand, within Dsui_3252at 3493.013 kb on - strand, within Dsui_3252at 3493.024 kb on - strand, within Dsui_3252at 3493.050 kb on + strand, within Dsui_3252at 3493.086 kb on + strand, within Dsui_3252at 3493.103 kb on - strand, within Dsui_3252at 3493.105 kb on - strand, within Dsui_3252at 3493.105 kb on - strand, within Dsui_3252at 3493.105 kb on - strand, within Dsui_3252at 3493.123 kb on + strand, within Dsui_3252at 3493.145 kb on - strand, within Dsui_3252at 3493.252 kb on - strandat 3493.262 kb on - strandat 3493.267 kb on + strandat 3493.381 kb on + strandat 3493.433 kb on - strandat 3493.440 kb on + strandat 3493.443 kb on - strandat 3493.492 kb on - strandat 3493.596 kb on - strand, within Dsui_3253at 3493.637 kb on + strand, within Dsui_3253at 3493.691 kb on + strand, within Dsui_3253at 3493.691 kb on + strand, within Dsui_3253at 3493.712 kb on - strand, within Dsui_3253at 3493.799 kb on + strandat 3493.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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3,492,958 + +0.1
3,493,005 + Dsui_3252 0.12 -0.6
3,493,005 + Dsui_3252 0.12 -0.1
3,493,013 - Dsui_3252 0.16 +0.0
3,493,024 - Dsui_3252 0.21 +0.0
3,493,050 + Dsui_3252 0.32 -0.2
3,493,086 + Dsui_3252 0.49 -1.4
3,493,103 - Dsui_3252 0.57 -0.2
3,493,105 - Dsui_3252 0.58 -0.2
3,493,105 - Dsui_3252 0.58 +0.7
3,493,105 - Dsui_3252 0.58 -0.5
3,493,123 + Dsui_3252 0.66 +0.2
3,493,145 - Dsui_3252 0.76 -0.0
3,493,252 - -0.2
3,493,262 - -1.1
3,493,267 + +0.9
3,493,381 + +0.1
3,493,433 - +0.9
3,493,440 + -0.0
3,493,443 - -0.3
3,493,492 - +0.3
3,493,596 - Dsui_3253 0.37 -0.8
3,493,637 + Dsui_3253 0.51 -1.3
3,493,691 + Dsui_3253 0.69 -1.5
3,493,691 + Dsui_3253 0.69 -1.1
3,493,712 - Dsui_3253 0.76 -1.3
3,493,799 + +0.1
3,493,838 - -0.6

Or see this region's nucleotide sequence