Strain Fitness in Dechlorosoma suillum PS around Dsui_2589

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2587 and Dsui_2588 are separated by 22 nucleotidesDsui_2588 and Dsui_2589 are separated by 10 nucleotidesDsui_2589 and Dsui_2590 are separated by 2 nucleotides Dsui_2587: Dsui_2587 - type IV secretory pathway, VirB10 component, at 2,740,060 to 2,741,385 _2587 Dsui_2588: Dsui_2588 - type IV secretory pathway, VirB9 component, at 2,741,408 to 2,742,262 _2588 Dsui_2589: Dsui_2589 - type II secretory pathway, component PulD, at 2,742,273 to 2,743,994 _2589 Dsui_2590: Dsui_2590 - Pilin accessory protein (PilO), at 2,743,997 to 2,745,409 _2590 Position (kb) 2742 2743 2744Strain fitness (log2 ratio) -2 -1 0 1 2at 2741.300 kb on + strandat 2741.308 kb on - strandat 2741.310 kb on + strandat 2741.318 kb on - strandat 2741.380 kb on + strandat 2741.931 kb on - strand, within Dsui_2588at 2742.097 kb on + strand, within Dsui_2588at 2742.240 kb on - strandat 2742.545 kb on + strand, within Dsui_2589at 2742.580 kb on - strand, within Dsui_2589at 2743.312 kb on - strandat 2743.472 kb on + strand, within Dsui_2589at 2743.552 kb on + strand, within Dsui_2589at 2743.560 kb on - strand, within Dsui_2589at 2743.641 kb on - strand, within Dsui_2589at 2743.652 kb on - strand, within Dsui_2589at 2743.654 kb on + strand, within Dsui_2589at 2743.662 kb on - strand, within Dsui_2589at 2743.666 kb on + strand, within Dsui_2589at 2743.676 kb on + strand, within Dsui_2589at 2743.678 kb on + strand, within Dsui_2589at 2743.678 kb on + strand, within Dsui_2589at 2743.679 kb on - strand, within Dsui_2589at 2743.768 kb on + strand, within Dsui_2589at 2743.768 kb on + strand, within Dsui_2589at 2744.026 kb on - strandat 2744.408 kb on + strand, within Dsui_2590at 2744.497 kb on - strand, within Dsui_2590at 2744.571 kb on - strand, within Dsui_2590at 2744.573 kb on + strand, within Dsui_2590at 2744.676 kb on - strand, within Dsui_2590at 2744.732 kb on + strand, within Dsui_2590at 2744.735 kb on + strandat 2744.752 kb on + strand, within Dsui_2590at 2744.762 kb on - strand, within Dsui_2590at 2744.855 kb on + strand, within Dsui_2590at 2744.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,741,300 + -0.3
2,741,308 - -0.6
2,741,310 + +0.6
2,741,318 - -1.2
2,741,380 + +1.2
2,741,931 - Dsui_2588 0.61 -1.0
2,742,097 + Dsui_2588 0.81 -0.2
2,742,240 - -2.0
2,742,545 + Dsui_2589 0.16 -1.5
2,742,580 - Dsui_2589 0.18 -0.3
2,743,312 - +1.8
2,743,472 + Dsui_2589 0.70 -0.5
2,743,552 + Dsui_2589 0.74 -0.8
2,743,560 - Dsui_2589 0.75 +0.1
2,743,641 - Dsui_2589 0.79 -1.4
2,743,652 - Dsui_2589 0.80 -1.0
2,743,654 + Dsui_2589 0.80 +0.5
2,743,662 - Dsui_2589 0.81 -0.2
2,743,666 + Dsui_2589 0.81 -0.6
2,743,676 + Dsui_2589 0.81 -0.0
2,743,678 + Dsui_2589 0.82 +0.2
2,743,678 + Dsui_2589 0.82 -0.4
2,743,679 - Dsui_2589 0.82 +0.4
2,743,768 + Dsui_2589 0.87 -1.0
2,743,768 + Dsui_2589 0.87 -0.6
2,744,026 - +1.4
2,744,408 + Dsui_2590 0.29 -0.1
2,744,497 - Dsui_2590 0.35 -0.2
2,744,571 - Dsui_2590 0.41 -1.4
2,744,573 + Dsui_2590 0.41 -1.0
2,744,676 - Dsui_2590 0.48 -0.2
2,744,732 + Dsui_2590 0.52 -1.6
2,744,735 + +1.1
2,744,752 + Dsui_2590 0.53 -0.9
2,744,762 - Dsui_2590 0.54 +0.5
2,744,855 + Dsui_2590 0.61 -1.5
2,744,932 + +2.4

Or see this region's nucleotide sequence