Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2587 and Dsui_2588 are separated by 22 nucleotides Dsui_2588 and Dsui_2589 are separated by 10 nucleotides Dsui_2589 and Dsui_2590 are separated by 2 nucleotides
Dsui_2587: Dsui_2587 - type IV secretory pathway, VirB10 component, at 2,740,060 to 2,741,385
_2587
Dsui_2588: Dsui_2588 - type IV secretory pathway, VirB9 component, at 2,741,408 to 2,742,262
_2588
Dsui_2589: Dsui_2589 - type II secretory pathway, component PulD, at 2,742,273 to 2,743,994
_2589
Dsui_2590: Dsui_2590 - Pilin accessory protein (PilO), at 2,743,997 to 2,745,409
_2590
Position (kb)
2742
2743
2744 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2741.300 kb on + strand at 2741.308 kb on - strand at 2741.310 kb on + strand at 2741.318 kb on - strand at 2741.380 kb on + strand at 2741.931 kb on - strand, within Dsui_2588 at 2742.097 kb on + strand, within Dsui_2588 at 2742.240 kb on - strand at 2742.545 kb on + strand, within Dsui_2589 at 2742.580 kb on - strand, within Dsui_2589 at 2743.312 kb on - strand at 2743.472 kb on + strand, within Dsui_2589 at 2743.552 kb on + strand, within Dsui_2589 at 2743.560 kb on - strand, within Dsui_2589 at 2743.641 kb on - strand, within Dsui_2589 at 2743.652 kb on - strand, within Dsui_2589 at 2743.654 kb on + strand, within Dsui_2589 at 2743.662 kb on - strand, within Dsui_2589 at 2743.666 kb on + strand, within Dsui_2589 at 2743.676 kb on + strand, within Dsui_2589 at 2743.678 kb on + strand, within Dsui_2589 at 2743.678 kb on + strand, within Dsui_2589 at 2743.679 kb on - strand, within Dsui_2589 at 2743.768 kb on + strand, within Dsui_2589 at 2743.768 kb on + strand, within Dsui_2589 at 2744.026 kb on - strand at 2744.408 kb on + strand, within Dsui_2590 at 2744.497 kb on - strand, within Dsui_2590 at 2744.571 kb on - strand, within Dsui_2590 at 2744.573 kb on + strand, within Dsui_2590 at 2744.676 kb on - strand, within Dsui_2590 at 2744.732 kb on + strand, within Dsui_2590 at 2744.735 kb on + strand at 2744.752 kb on + strand, within Dsui_2590 at 2744.762 kb on - strand, within Dsui_2590 at 2744.855 kb on + strand, within Dsui_2590 at 2744.932 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 2,741,300 + -0.3 2,741,308 - -0.6 2,741,310 + +0.6 2,741,318 - -1.2 2,741,380 + +1.2 2,741,931 - Dsui_2588 0.61 -1.0 2,742,097 + Dsui_2588 0.81 -0.2 2,742,240 - -2.0 2,742,545 + Dsui_2589 0.16 -1.5 2,742,580 - Dsui_2589 0.18 -0.3 2,743,312 - +1.8 2,743,472 + Dsui_2589 0.70 -0.5 2,743,552 + Dsui_2589 0.74 -0.8 2,743,560 - Dsui_2589 0.75 +0.1 2,743,641 - Dsui_2589 0.79 -1.4 2,743,652 - Dsui_2589 0.80 -1.0 2,743,654 + Dsui_2589 0.80 +0.5 2,743,662 - Dsui_2589 0.81 -0.2 2,743,666 + Dsui_2589 0.81 -0.6 2,743,676 + Dsui_2589 0.81 -0.0 2,743,678 + Dsui_2589 0.82 +0.2 2,743,678 + Dsui_2589 0.82 -0.4 2,743,679 - Dsui_2589 0.82 +0.4 2,743,768 + Dsui_2589 0.87 -1.0 2,743,768 + Dsui_2589 0.87 -0.6 2,744,026 - +1.4 2,744,408 + Dsui_2590 0.29 -0.1 2,744,497 - Dsui_2590 0.35 -0.2 2,744,571 - Dsui_2590 0.41 -1.4 2,744,573 + Dsui_2590 0.41 -1.0 2,744,676 - Dsui_2590 0.48 -0.2 2,744,732 + Dsui_2590 0.52 -1.6 2,744,735 + +1.1 2,744,752 + Dsui_2590 0.53 -0.9 2,744,762 - Dsui_2590 0.54 +0.5 2,744,855 + Dsui_2590 0.61 -1.5 2,744,932 + +2.4
Or see this region's nucleotide sequence