Strain Fitness in Dechlorosoma suillum PS around Dsui_2089

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2088 and Dsui_2089 are separated by 102 nucleotidesDsui_2089 and Dsui_2090 are separated by 133 nucleotides Dsui_2088: Dsui_2088 - cytochrome c, at 2,210,365 to 2,211,318 _2088 Dsui_2089: Dsui_2089 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 2,211,421 to 2,212,176 _2089 Dsui_2090: Dsui_2090 - transcriptional regulator, at 2,212,310 to 2,213,251 _2090 Position (kb) 2211 2212 2213Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2210.454 kb on + strandat 2210.697 kb on + strand, within Dsui_2088at 2210.761 kb on - strand, within Dsui_2088at 2210.922 kb on - strand, within Dsui_2088at 2211.017 kb on - strand, within Dsui_2088at 2211.129 kb on + strand, within Dsui_2088at 2211.275 kb on + strandat 2211.364 kb on - strandat 2211.364 kb on - strandat 2211.393 kb on + strandat 2211.532 kb on + strandat 2211.764 kb on - strandat 2211.825 kb on + strandat 2212.184 kb on - strandat 2212.185 kb on + strandat 2212.308 kb on + strandat 2212.308 kb on + strandat 2212.308 kb on + strandat 2212.318 kb on + strandat 2212.326 kb on - strandat 2212.326 kb on - strandat 2212.362 kb on + strandat 2212.394 kb on + strandat 2212.571 kb on + strand, within Dsui_2090at 2212.589 kb on - strand, within Dsui_2090at 2212.628 kb on + strand, within Dsui_2090at 2212.684 kb on + strand, within Dsui_2090at 2212.887 kb on + strand, within Dsui_2090at 2212.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,210,454 + +0.3
2,210,697 + Dsui_2088 0.35 +0.4
2,210,761 - Dsui_2088 0.42 +0.0
2,210,922 - Dsui_2088 0.58 -0.2
2,211,017 - Dsui_2088 0.68 +0.0
2,211,129 + Dsui_2088 0.80 -2.0
2,211,275 + +3.4
2,211,364 - +2.4
2,211,364 - -0.2
2,211,393 + +0.4
2,211,532 + +0.4
2,211,764 - -0.5
2,211,825 + +1.0
2,212,184 - +0.8
2,212,185 + +0.0
2,212,308 + +0.3
2,212,308 + +1.8
2,212,308 + +0.0
2,212,318 + +0.1
2,212,326 - +1.4
2,212,326 - +2.4
2,212,362 + +0.5
2,212,394 + -1.6
2,212,571 + Dsui_2090 0.28 +0.5
2,212,589 - Dsui_2090 0.30 -0.1
2,212,628 + Dsui_2090 0.34 +0.6
2,212,684 + Dsui_2090 0.40 +0.7
2,212,887 + Dsui_2090 0.61 +1.0
2,212,932 - +0.4

Or see this region's nucleotide sequence