Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3195

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3194 and DvMF_3195 are separated by 565 nucleotidesDvMF_3195 and DvMF_3196 are separated by 237 nucleotides DvMF_3194: DvMF_3194 - NADH dehydrogenase (quinone) (RefSeq), at 4,023,362 to 4,027,156 _3194 DvMF_3195: DvMF_3195 - small multidrug resistance protein (RefSeq), at 4,027,722 to 4,028,090 _3195 DvMF_3196: DvMF_3196 - hypothetical protein (RefSeq), at 4,028,328 to 4,029,296 _3196 Position (kb) 4027 4028 4029Strain fitness (log2 ratio) -1 0 1at 4026.762 kb on - strand, within DvMF_3194at 4027.702 kb on - strandat 4027.875 kb on + strand, within DvMF_3195at 4027.895 kb on + strand, within DvMF_3195at 4027.959 kb on - strand, within DvMF_3195at 4028.020 kb on - strand, within DvMF_3195at 4028.375 kb on + strandat 4028.419 kb on + strandat 4028.477 kb on + strand, within DvMF_3196at 4028.548 kb on + strand, within DvMF_3196at 4028.702 kb on + strand, within DvMF_3196at 4028.707 kb on + strand, within DvMF_3196at 4028.715 kb on - strand, within DvMF_3196

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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4,026,762 - DvMF_3194 0.90 +0.7
4,027,702 - +0.1
4,027,875 + DvMF_3195 0.41 -0.4
4,027,895 + DvMF_3195 0.47 +0.3
4,027,959 - DvMF_3195 0.64 -0.2
4,028,020 - DvMF_3195 0.81 +0.9
4,028,375 + -0.4
4,028,419 + -0.5
4,028,477 + DvMF_3196 0.15 -0.5
4,028,548 + DvMF_3196 0.23 -0.4
4,028,702 + DvMF_3196 0.39 -0.5
4,028,707 + DvMF_3196 0.39 -0.2
4,028,715 - DvMF_3196 0.40 -0.6

Or see this region's nucleotide sequence