Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3194

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3193 and DvMF_3194 are separated by 3 nucleotidesDvMF_3194 and DvMF_3195 are separated by 565 nucleotides DvMF_3193: DvMF_3193 - respiratory-chain NADH dehydrogenase subunit 1 (RefSeq), at 4,022,360 to 4,023,358 _3193 DvMF_3194: DvMF_3194 - NADH dehydrogenase (quinone) (RefSeq), at 4,023,362 to 4,027,156 _3194 DvMF_3195: DvMF_3195 - small multidrug resistance protein (RefSeq), at 4,027,722 to 4,028,090 _3195 Position (kb) 4023 4024 4025 4026 4027 4028Strain fitness (log2 ratio) -1 0 1at 4022.587 kb on - strand, within DvMF_3193at 4022.624 kb on + strand, within DvMF_3193at 4023.304 kb on + strandat 4023.421 kb on - strandat 4023.515 kb on - strandat 4023.824 kb on - strand, within DvMF_3194at 4023.824 kb on - strand, within DvMF_3194at 4024.133 kb on - strand, within DvMF_3194at 4024.203 kb on - strand, within DvMF_3194at 4024.300 kb on - strand, within DvMF_3194at 4024.589 kb on + strand, within DvMF_3194at 4024.717 kb on - strand, within DvMF_3194at 4024.824 kb on + strand, within DvMF_3194at 4024.844 kb on + strand, within DvMF_3194at 4024.850 kb on + strand, within DvMF_3194at 4025.200 kb on - strand, within DvMF_3194at 4025.219 kb on - strand, within DvMF_3194at 4025.219 kb on - strand, within DvMF_3194at 4025.527 kb on - strand, within DvMF_3194at 4025.586 kb on + strand, within DvMF_3194at 4025.620 kb on - strand, within DvMF_3194at 4025.827 kb on + strand, within DvMF_3194at 4026.181 kb on - strand, within DvMF_3194at 4026.279 kb on - strand, within DvMF_3194at 4026.341 kb on + strand, within DvMF_3194at 4026.377 kb on + strand, within DvMF_3194at 4026.500 kb on + strand, within DvMF_3194at 4026.762 kb on - strand, within DvMF_3194at 4027.702 kb on - strandat 4027.875 kb on + strand, within DvMF_3195at 4027.895 kb on + strand, within DvMF_3195at 4027.959 kb on - strand, within DvMF_3195at 4028.020 kb on - strand, within DvMF_3195

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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4,022,587 - DvMF_3193 0.23 -0.1
4,022,624 + DvMF_3193 0.26 +0.5
4,023,304 + -0.0
4,023,421 - +0.5
4,023,515 - -0.5
4,023,824 - DvMF_3194 0.12 +0.7
4,023,824 - DvMF_3194 0.12 -0.0
4,024,133 - DvMF_3194 0.20 +1.0
4,024,203 - DvMF_3194 0.22 -0.2
4,024,300 - DvMF_3194 0.25 +0.1
4,024,589 + DvMF_3194 0.32 +0.0
4,024,717 - DvMF_3194 0.36 +0.4
4,024,824 + DvMF_3194 0.39 +0.5
4,024,844 + DvMF_3194 0.39 +0.8
4,024,850 + DvMF_3194 0.39 +0.1
4,025,200 - DvMF_3194 0.48 -0.4
4,025,219 - DvMF_3194 0.49 +0.1
4,025,219 - DvMF_3194 0.49 +0.6
4,025,527 - DvMF_3194 0.57 +0.3
4,025,586 + DvMF_3194 0.59 +0.2
4,025,620 - DvMF_3194 0.59 -0.1
4,025,827 + DvMF_3194 0.65 +0.3
4,026,181 - DvMF_3194 0.74 +0.2
4,026,279 - DvMF_3194 0.77 +1.6
4,026,341 + DvMF_3194 0.78 +0.5
4,026,377 + DvMF_3194 0.79 -0.4
4,026,500 + DvMF_3194 0.83 +0.1
4,026,762 - DvMF_3194 0.90 +0.7
4,027,702 - +0.1
4,027,875 + DvMF_3195 0.41 -0.4
4,027,895 + DvMF_3195 0.47 +0.3
4,027,959 - DvMF_3195 0.64 -0.2
4,028,020 - DvMF_3195 0.81 +0.9

Or see this region's nucleotide sequence