Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3190

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3189 and DvMF_3190 overlap by 4 nucleotidesDvMF_3190 and DvMF_3191 overlap by 32 nucleotidesDvMF_3191 and DvMF_3192 are separated by 3 nucleotides DvMF_3189: DvMF_3189 - NADH dehydrogenase (quinone) (RefSeq), at 4,019,464 to 4,020,597 _3189 DvMF_3190: DvMF_3190 - NADH dehydrogenase (ubiquinone) 30 kDa subunit (RefSeq), at 4,020,594 to 4,021,241 _3190 DvMF_3191: DvMF_3191 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 4,021,210 to 4,021,899 _3191 DvMF_3192: DvMF_3192 - NADH ubiquinone oxidoreductase 20 kDa subunit (RefSeq), at 4,021,903 to 4,022,343 _3192 Position (kb) 4020 4021 4022Strain fitness (log2 ratio) -1 0 1 2at 4019.627 kb on + strand, within DvMF_3189at 4019.858 kb on + strand, within DvMF_3189at 4020.230 kb on - strand, within DvMF_3189at 4020.585 kb on + strandat 4020.968 kb on + strand, within DvMF_3190at 4020.970 kb on - strand, within DvMF_3190at 4021.207 kb on + strandat 4021.568 kb on - strand, within DvMF_3191at 4022.171 kb on + strand, within DvMF_3192

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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4,019,627 + DvMF_3189 0.14 +0.7
4,019,858 + DvMF_3189 0.35 +1.0
4,020,230 - DvMF_3189 0.68 +1.4
4,020,585 + -0.2
4,020,968 + DvMF_3190 0.58 +1.0
4,020,970 - DvMF_3190 0.58 +1.3
4,021,207 + +0.9
4,021,568 - DvMF_3191 0.52 +1.4
4,022,171 + DvMF_3192 0.61 +2.3

Or see this region's nucleotide sequence