Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3174

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3173 and DvMF_3174 are separated by 417 nucleotidesDvMF_3174 and DvMF_3175 are separated by 220 nucleotides DvMF_3173: DvMF_3173 - Carboxylyase-related protein (RefSeq), at 4,001,377 to 4,003,251 _3173 DvMF_3174: DvMF_3174 - putative two component transcriptional regulator, winged helix family (RefSeq), at 4,003,669 to 4,004,508 _3174 DvMF_3175: DvMF_3175 - Rubrerythrin (RefSeq), at 4,004,729 to 4,005,223 _3175 Position (kb) 4003 4004 4005Strain fitness (log2 ratio) -1 0 1at 4003.299 kb on - strandat 4003.314 kb on - strandat 4003.640 kb on + strandat 4003.668 kb on - strandat 4003.896 kb on - strand, within DvMF_3174at 4004.673 kb on + strandat 4004.885 kb on - strand, within DvMF_3175at 4004.909 kb on - strand, within DvMF_3175at 4004.909 kb on - strand, within DvMF_3175at 4004.911 kb on + strand, within DvMF_3175at 4005.414 kb on + strandat 4005.431 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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4,003,299 - -0.4
4,003,314 - -0.7
4,003,640 + -0.7
4,003,668 - -0.5
4,003,896 - DvMF_3174 0.27 -1.2
4,004,673 + -0.5
4,004,885 - DvMF_3175 0.32 -0.2
4,004,909 - DvMF_3175 0.36 -0.5
4,004,909 - DvMF_3175 0.36 -0.3
4,004,911 + DvMF_3175 0.37 -0.5
4,005,414 + -0.9
4,005,431 + -0.2

Or see this region's nucleotide sequence