Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3173

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3172 and DvMF_3173 are separated by 370 nucleotidesDvMF_3173 and DvMF_3174 are separated by 417 nucleotides DvMF_3172: DvMF_3172 - UTP--glucose-1-phosphate uridylyltransferase (RefSeq), at 3,999,603 to 4,001,006 _3172 DvMF_3173: DvMF_3173 - Carboxylyase-related protein (RefSeq), at 4,001,377 to 4,003,251 _3173 DvMF_3174: DvMF_3174 - putative two component transcriptional regulator, winged helix family (RefSeq), at 4,003,669 to 4,004,508 _3174 Position (kb) 4001 4002 4003 4004Strain fitness (log2 ratio) -1 0 1 2 3at 4000.432 kb on - strand, within DvMF_3172at 4000.518 kb on - strand, within DvMF_3172at 4000.599 kb on + strand, within DvMF_3172at 4000.889 kb on + strandat 4000.892 kb on - strandat 4000.921 kb on - strandat 4001.110 kb on - strandat 4001.122 kb on - strandat 4001.387 kb on - strandat 4003.299 kb on - strandat 4003.314 kb on - strandat 4003.640 kb on + strandat 4003.668 kb on - strandat 4003.896 kb on - strand, within DvMF_3174

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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4,000,432 - DvMF_3172 0.59 +1.0
4,000,518 - DvMF_3172 0.65 +1.1
4,000,599 + DvMF_3172 0.71 +1.1
4,000,889 + +1.8
4,000,892 - +1.1
4,000,921 - +1.1
4,001,110 - -0.3
4,001,122 - +3.4
4,001,387 - +0.0
4,003,299 - -0.4
4,003,314 - -0.7
4,003,640 + -0.7
4,003,668 - -0.5
4,003,896 - DvMF_3174 0.27 -1.2

Or see this region's nucleotide sequence