Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3027 and DvMF_3028 are separated by 1 nucleotides DvMF_3028 and DvMF_3029 are separated by 4 nucleotides DvMF_3029 and DvMF_3030 are separated by 136 nucleotides DvMF_3030 and DvMF_3031 are separated by 480 nucleotides
DvMF_3027: DvMF_3027 - inner-membrane translocator (RefSeq), at 3,820,929 to 3,822,002
_3027
DvMF_3028: DvMF_3028 - inner-membrane translocator (RefSeq), at 3,822,004 to 3,822,930
_3028
DvMF_3029: DvMF_3029 - ABC transporter related (RefSeq), at 3,822,935 to 3,824,548
_3029
DvMF_3030: DvMF_3030 - regulatory protein, FmdB family (RefSeq), at 3,824,685 to 3,824,996
_3030
DvMF_3031: DvMF_3031 - intracellular protease, PfpI family (RefSeq), at 3,825,477 to 3,826,064
_3031
Position (kb)
3822
3823
3824
3825 Strain fitness (log2 ratio)
-1
0
1 at 3822.070 kb on - strand at 3822.298 kb on - strand, within DvMF_3028 at 3822.457 kb on - strand, within DvMF_3028 at 3822.836 kb on - strand, within DvMF_3028 at 3823.136 kb on - strand, within DvMF_3029 at 3823.560 kb on + strand, within DvMF_3029 at 3823.578 kb on - strand, within DvMF_3029 at 3824.135 kb on + strand, within DvMF_3029 at 3825.038 kb on + strand at 3825.038 kb on + strand at 3825.046 kb on - strand at 3825.138 kb on - strand at 3825.268 kb on + strand at 3825.470 kb on - strand at 3825.473 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml remove 3,822,070 - +0.7 3,822,298 - DvMF_3028 0.32 +0.5 3,822,457 - DvMF_3028 0.49 +0.4 3,822,836 - DvMF_3028 0.90 +0.8 3,823,136 - DvMF_3029 0.12 +0.4 3,823,560 + DvMF_3029 0.39 +0.3 3,823,578 - DvMF_3029 0.40 +0.3 3,824,135 + DvMF_3029 0.74 +0.6 3,825,038 + -0.5 3,825,038 + -0.5 3,825,046 - -0.3 3,825,138 - -1.0 3,825,268 + +0.8 3,825,470 - -0.5 3,825,473 + +0.1
Or see this region's nucleotide sequence