Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3029

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3027 and DvMF_3028 are separated by 1 nucleotidesDvMF_3028 and DvMF_3029 are separated by 4 nucleotidesDvMF_3029 and DvMF_3030 are separated by 136 nucleotidesDvMF_3030 and DvMF_3031 are separated by 480 nucleotides DvMF_3027: DvMF_3027 - inner-membrane translocator (RefSeq), at 3,820,929 to 3,822,002 _3027 DvMF_3028: DvMF_3028 - inner-membrane translocator (RefSeq), at 3,822,004 to 3,822,930 _3028 DvMF_3029: DvMF_3029 - ABC transporter related (RefSeq), at 3,822,935 to 3,824,548 _3029 DvMF_3030: DvMF_3030 - regulatory protein, FmdB family (RefSeq), at 3,824,685 to 3,824,996 _3030 DvMF_3031: DvMF_3031 - intracellular protease, PfpI family (RefSeq), at 3,825,477 to 3,826,064 _3031 Position (kb) 3822 3823 3824 3825Strain fitness (log2 ratio) -1 0 1at 3822.070 kb on - strandat 3822.298 kb on - strand, within DvMF_3028at 3822.457 kb on - strand, within DvMF_3028at 3822.836 kb on - strand, within DvMF_3028at 3823.136 kb on - strand, within DvMF_3029at 3823.560 kb on + strand, within DvMF_3029at 3823.578 kb on - strand, within DvMF_3029at 3824.135 kb on + strand, within DvMF_3029at 3825.038 kb on + strandat 3825.038 kb on + strandat 3825.046 kb on - strandat 3825.138 kb on - strandat 3825.268 kb on + strandat 3825.470 kb on - strandat 3825.473 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,822,070 - +0.7
3,822,298 - DvMF_3028 0.32 +0.5
3,822,457 - DvMF_3028 0.49 +0.4
3,822,836 - DvMF_3028 0.90 +0.8
3,823,136 - DvMF_3029 0.12 +0.4
3,823,560 + DvMF_3029 0.39 +0.3
3,823,578 - DvMF_3029 0.40 +0.3
3,824,135 + DvMF_3029 0.74 +0.6
3,825,038 + -0.5
3,825,038 + -0.5
3,825,046 - -0.3
3,825,138 - -1.0
3,825,268 + +0.8
3,825,470 - -0.5
3,825,473 + +0.1

Or see this region's nucleotide sequence