Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2970

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2969 and DvMF_2970 overlap by 4 nucleotidesDvMF_2970 and DvMF_2971 overlap by 4 nucleotides DvMF_2969: DvMF_2969 - ABC transporter related (RefSeq), at 3,744,570 to 3,745,826 _2969 DvMF_2970: DvMF_2970 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,745,823 to 3,746,728 _2970 DvMF_2971: DvMF_2971 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,746,725 to 3,747,585 _2971 Position (kb) 3745 3746 3747Strain fitness (log2 ratio) -1 0 1 2at 3744.939 kb on + strand, within DvMF_2969at 3744.992 kb on - strand, within DvMF_2969at 3744.992 kb on - strand, within DvMF_2969at 3745.136 kb on + strand, within DvMF_2969at 3745.502 kb on + strand, within DvMF_2969at 3745.640 kb on + strand, within DvMF_2969at 3745.954 kb on + strand, within DvMF_2970at 3745.974 kb on - strand, within DvMF_2970at 3746.035 kb on - strand, within DvMF_2970at 3746.037 kb on + strand, within DvMF_2970at 3746.114 kb on - strand, within DvMF_2970at 3746.344 kb on + strand, within DvMF_2970at 3746.360 kb on - strand, within DvMF_2970at 3746.362 kb on + strand, within DvMF_2970at 3746.397 kb on + strand, within DvMF_2970at 3746.444 kb on - strand, within DvMF_2970at 3746.644 kb on - strandat 3746.715 kb on + strandat 3747.225 kb on + strand, within DvMF_2971at 3747.281 kb on + strand, within DvMF_2971at 3747.281 kb on + strand, within DvMF_2971at 3747.408 kb on + strand, within DvMF_2971at 3747.416 kb on - strand, within DvMF_2971at 3747.482 kb on + strand, within DvMF_2971at 3747.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,744,939 + DvMF_2969 0.29 +1.7
3,744,992 - DvMF_2969 0.34 -0.4
3,744,992 - DvMF_2969 0.34 -0.1
3,745,136 + DvMF_2969 0.45 -1.4
3,745,502 + DvMF_2969 0.74 -0.7
3,745,640 + DvMF_2969 0.85 -0.5
3,745,954 + DvMF_2970 0.14 -0.2
3,745,974 - DvMF_2970 0.17 -0.3
3,746,035 - DvMF_2970 0.23 -0.3
3,746,037 + DvMF_2970 0.24 -0.4
3,746,114 - DvMF_2970 0.32 -0.4
3,746,344 + DvMF_2970 0.58 -0.1
3,746,360 - DvMF_2970 0.59 +1.8
3,746,362 + DvMF_2970 0.59 -0.0
3,746,397 + DvMF_2970 0.63 +0.0
3,746,444 - DvMF_2970 0.69 -0.2
3,746,644 - -0.1
3,746,715 + -0.1
3,747,225 + DvMF_2971 0.58 +0.0
3,747,281 + DvMF_2971 0.65 -0.1
3,747,281 + DvMF_2971 0.65 -0.0
3,747,408 + DvMF_2971 0.79 -0.3
3,747,416 - DvMF_2971 0.80 -0.1
3,747,482 + DvMF_2971 0.88 -0.3
3,747,642 - -0.5

Or see this region's nucleotide sequence