Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2968

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2967 and DvMF_2968 are separated by 180 nucleotidesDvMF_2968 and DvMF_2969 are separated by 318 nucleotides DvMF_2967: DvMF_2967 - RarD protein, DMT superfamily transporter (RefSeq), at 3,742,086 to 3,743,000 _2967 DvMF_2968: DvMF_2968 - extracellular solute-binding protein family 1 (RefSeq), at 3,743,181 to 3,744,251 _2968 DvMF_2969: DvMF_2969 - ABC transporter related (RefSeq), at 3,744,570 to 3,745,826 _2969 Position (kb) 3743 3744 3745Strain fitness (log2 ratio) -2 -1 0 1 2at 3742.615 kb on - strand, within DvMF_2967at 3742.757 kb on + strand, within DvMF_2967at 3742.827 kb on - strand, within DvMF_2967at 3742.932 kb on + strandat 3743.052 kb on - strandat 3743.220 kb on + strandat 3743.267 kb on - strandat 3743.486 kb on + strand, within DvMF_2968at 3743.551 kb on - strand, within DvMF_2968at 3743.551 kb on - strand, within DvMF_2968at 3743.555 kb on + strand, within DvMF_2968at 3743.555 kb on + strand, within DvMF_2968at 3743.622 kb on + strand, within DvMF_2968at 3743.728 kb on + strand, within DvMF_2968at 3744.104 kb on - strand, within DvMF_2968at 3744.555 kb on + strandat 3744.566 kb on - strandat 3744.679 kb on - strandat 3744.731 kb on - strand, within DvMF_2969at 3744.804 kb on - strand, within DvMF_2969at 3744.939 kb on + strand, within DvMF_2969at 3744.992 kb on - strand, within DvMF_2969at 3744.992 kb on - strand, within DvMF_2969at 3745.136 kb on + strand, within DvMF_2969

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,742,615 - DvMF_2967 0.58 +0.3
3,742,757 + DvMF_2967 0.73 -0.4
3,742,827 - DvMF_2967 0.81 -2.0
3,742,932 + -0.6
3,743,052 - -0.6
3,743,220 + -0.1
3,743,267 - +0.1
3,743,486 + DvMF_2968 0.28 -0.2
3,743,551 - DvMF_2968 0.35 +0.0
3,743,551 - DvMF_2968 0.35 -0.2
3,743,555 + DvMF_2968 0.35 -0.6
3,743,555 + DvMF_2968 0.35 +0.5
3,743,622 + DvMF_2968 0.41 -0.2
3,743,728 + DvMF_2968 0.51 -0.2
3,744,104 - DvMF_2968 0.86 -0.1
3,744,555 + -0.6
3,744,566 - -0.5
3,744,679 - +0.1
3,744,731 - DvMF_2969 0.13 +0.2
3,744,804 - DvMF_2969 0.19 +1.9
3,744,939 + DvMF_2969 0.29 +1.7
3,744,992 - DvMF_2969 0.34 -0.4
3,744,992 - DvMF_2969 0.34 -0.1
3,745,136 + DvMF_2969 0.45 -1.4

Or see this region's nucleotide sequence