Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2884

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2882 and rplS are separated by 276 nucleotidesrplS and DvMF_2884 are separated by 55 nucleotidesDvMF_2884 and DvMF_2885 are separated by 16 nucleotidesDvMF_2885 and DvMF_2886 are separated by 196 nucleotides DvMF_2882: DvMF_2882 - Ribonuclease H (RefSeq), at 3,639,113 to 3,639,991 _2882 DvMF_2883: rplS - 50S ribosomal protein L19 (RefSeq), at 3,640,268 to 3,640,615 rplS DvMF_2884: DvMF_2884 - tRNA (guanine-N1)-methyltransferase (RefSeq), at 3,640,671 to 3,641,966 _2884 DvMF_2885: DvMF_2885 - 16S rRNA processing protein RimM (RefSeq), at 3,641,983 to 3,642,615 _2885 DvMF_2886: DvMF_2886 - hypothetical protein (RefSeq), at 3,642,812 to 3,643,045 _2886 Position (kb) 3640 3641 3642Strain fitness (log2 ratio) -1 0 1at 3642.032 kb on + strandat 3642.057 kb on + strand, within DvMF_2885

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,642,032 + -1.4
3,642,057 + DvMF_2885 0.12 -1.2

Or see this region's nucleotide sequence