Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2882

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2880 and DvMF_2881 overlap by 59 nucleotidesDvMF_2881 and DvMF_2882 overlap by 4 nucleotidesDvMF_2882 and rplS are separated by 276 nucleotidesrplS and DvMF_2884 are separated by 55 nucleotides DvMF_2880: DvMF_2880 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq), at 3,637,895 to 3,638,734 _2880 DvMF_2881: DvMF_2881 - protein of unknown function UPF0102 (RefSeq), at 3,638,676 to 3,639,116 _2881 DvMF_2882: DvMF_2882 - Ribonuclease H (RefSeq), at 3,639,113 to 3,639,991 _2882 DvMF_2883: rplS - 50S ribosomal protein L19 (RefSeq), at 3,640,268 to 3,640,615 rplS DvMF_2884: DvMF_2884 - tRNA (guanine-N1)-methyltransferase (RefSeq), at 3,640,671 to 3,641,966 _2884 Position (kb) 3639 3640Strain fitness (log2 ratio) -1 0 1at 3638.184 kb on + strand, within DvMF_2880at 3638.188 kb on + strand, within DvMF_2880at 3638.217 kb on + strand, within DvMF_2880at 3638.274 kb on - strand, within DvMF_2880at 3638.368 kb on - strand, within DvMF_2880at 3638.378 kb on - strand, within DvMF_2880at 3638.413 kb on + strand, within DvMF_2880at 3638.546 kb on - strand, within DvMF_2880at 3638.707 kb on + strandat 3638.740 kb on - strand, within DvMF_2881at 3638.766 kb on + strand, within DvMF_2881at 3638.869 kb on - strand, within DvMF_2881at 3638.913 kb on + strand, within DvMF_2881at 3639.120 kb on + strandat 3639.215 kb on - strand, within DvMF_2882at 3639.232 kb on - strand, within DvMF_2882at 3639.279 kb on + strand, within DvMF_2882at 3639.282 kb on - strand, within DvMF_2882at 3639.356 kb on - strand, within DvMF_2882

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,638,184 + DvMF_2880 0.34 -0.3
3,638,188 + DvMF_2880 0.35 -0.1
3,638,217 + DvMF_2880 0.38 -0.4
3,638,274 - DvMF_2880 0.45 +0.1
3,638,368 - DvMF_2880 0.56 -0.2
3,638,378 - DvMF_2880 0.57 +0.2
3,638,413 + DvMF_2880 0.62 -0.2
3,638,546 - DvMF_2880 0.78 +0.1
3,638,707 + -0.3
3,638,740 - DvMF_2881 0.15 -0.3
3,638,766 + DvMF_2881 0.20 -0.6
3,638,869 - DvMF_2881 0.44 -0.3
3,638,913 + DvMF_2881 0.54 -0.6
3,639,120 + -0.1
3,639,215 - DvMF_2882 0.12 -0.4
3,639,232 - DvMF_2882 0.14 -0.6
3,639,279 + DvMF_2882 0.19 -0.1
3,639,282 - DvMF_2882 0.19 +0.0
3,639,356 - DvMF_2882 0.28 -0.1

Or see this region's nucleotide sequence