Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2837

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2836 and DvMF_2837 are separated by 24 nucleotidesDvMF_2837 and gatA are separated by 377 nucleotides DvMF_2836: DvMF_2836 - hypothetical protein (RefSeq), at 3,582,052 to 3,584,379 _2836 DvMF_2837: DvMF_2837 - glutamyl-tRNA(Gln) amidotransferase, C subunit (RefSeq), at 3,584,404 to 3,584,691 _2837 DvMF_2838: gatA - aspartyl/glutamyl-tRNA amidotransferase subunit A (RefSeq), at 3,585,069 to 3,586,574 gatA Position (kb) 3584 3585Strain fitness (log2 ratio) -3 -2 -1 0 1at 3583.608 kb on - strand, within DvMF_2836at 3583.744 kb on + strand, within DvMF_2836at 3584.045 kb on + strand, within DvMF_2836at 3584.284 kb on + strandat 3584.396 kb on - strandat 3585.026 kb on + strandat 3585.052 kb on - strandat 3585.054 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,583,608 - DvMF_2836 0.67 -2.6
3,583,744 + DvMF_2836 0.73 -3.1
3,584,045 + DvMF_2836 0.86 -2.4
3,584,284 + -3.5
3,584,396 - -0.4
3,585,026 + +0.3
3,585,052 - -0.5
3,585,054 + +0.0

Or see this region's nucleotide sequence