Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2833

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2831 and atpC are separated by 10 nucleotidesatpC and DvMF_2833 are separated by 533 nucleotidesDvMF_2833 and DvMF_2834 are separated by 555 nucleotides DvMF_2831: DvMF_2831 - F0F1 ATP synthase subunit beta (RefSeq), at 3,576,180 to 3,577,595 _2831 DvMF_2832: atpC - F0F1 ATP synthase subunit epsilon (RefSeq), at 3,577,606 to 3,578,010 atpC DvMF_2833: DvMF_2833 - hypothetical protein (RefSeq), at 3,578,544 to 3,578,780 _2833 DvMF_2834: DvMF_2834 - hypothetical protein (RefSeq), at 3,579,336 to 3,579,683 _2834 Position (kb) 3578 3579Strain fitness (log2 ratio) -1 0 1 2at 3577.895 kb on + strand, within atpCat 3578.015 kb on + strandat 3578.158 kb on + strandat 3578.238 kb on + strandat 3578.368 kb on - strandat 3578.393 kb on - strandat 3578.483 kb on + strandat 3578.491 kb on + strandat 3578.491 kb on - strandat 3578.579 kb on + strand, within DvMF_2833at 3578.579 kb on + strand, within DvMF_2833at 3578.714 kb on - strand, within DvMF_2833at 3578.900 kb on + strandat 3579.022 kb on - strandat 3579.022 kb on - strandat 3579.118 kb on + strandat 3579.151 kb on + strandat 3579.153 kb on + strandat 3579.494 kb on + strand, within DvMF_2834at 3579.496 kb on + strand, within DvMF_2834

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,577,895 + atpC DvMF_2832 0.71 +2.5
3,578,015 + +2.0
3,578,158 + -1.1
3,578,238 + -0.5
3,578,368 - -0.6
3,578,393 - -0.3
3,578,483 + -0.5
3,578,491 + -0.2
3,578,491 - -1.0
3,578,579 + DvMF_2833 0.15 -0.3
3,578,579 + DvMF_2833 0.15 -0.1
3,578,714 - DvMF_2833 0.72 -0.4
3,578,900 + -0.2
3,579,022 - -0.0
3,579,022 - -0.5
3,579,118 + -0.4
3,579,151 + -0.5
3,579,153 + -1.1
3,579,494 + DvMF_2834 0.45 -0.3
3,579,496 + DvMF_2834 0.46 -0.4

Or see this region's nucleotide sequence