Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2680

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2679 and DvMF_2680 are separated by 996 nucleotidesDvMF_2680 and DvMF_2681 are separated by 348 nucleotides DvMF_2679: DvMF_2679 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,385,000 to 3,386,460 _2679 DvMF_2680: DvMF_2680 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 3,387,457 to 3,388,110 _2680 DvMF_2681: DvMF_2681 - ribonuclease BN (RefSeq), at 3,388,459 to 3,390,144 _2681 Position (kb) 3387 3388 3389Strain fitness (log2 ratio) -1 0 1at 3386.471 kb on - strandat 3386.960 kb on + strandat 3387.276 kb on + strandat 3387.314 kb on + strandat 3387.330 kb on - strandat 3387.981 kb on - strand, within DvMF_2680at 3388.023 kb on - strand, within DvMF_2680at 3388.248 kb on - strandat 3388.474 kb on + strandat 3388.546 kb on + strandat 3388.791 kb on - strand, within DvMF_2681at 3388.817 kb on + strand, within DvMF_2681at 3388.825 kb on - strand, within DvMF_2681

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,386,471 - -0.5
3,386,960 + -0.5
3,387,276 + -0.8
3,387,314 + -0.3
3,387,330 - -0.6
3,387,981 - DvMF_2680 0.80 -0.4
3,388,023 - DvMF_2680 0.87 -0.3
3,388,248 - -0.3
3,388,474 + -1.4
3,388,546 + -0.2
3,388,791 - DvMF_2681 0.20 -0.0
3,388,817 + DvMF_2681 0.21 -0.1
3,388,825 - DvMF_2681 0.22 +0.1

Or see this region's nucleotide sequence