Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2468

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2466 and DvMF_2467 are separated by 73 nucleotidesDvMF_2467 and DvMF_2468 are separated by 58 nucleotidesDvMF_2468 and DvMF_2469 overlap by 4 nucleotidesDvMF_2469 and DvMF_2470 are separated by 11 nucleotides DvMF_2466: DvMF_2466 - no description, at 3,110,625 to 3,112,035 _2466 DvMF_2467: DvMF_2467 - hypothetical protein (RefSeq), at 3,112,109 to 3,112,639 _2467 DvMF_2468: DvMF_2468 - molybdopterin-containing oxidoreductase membrane anchor subunit (RefSeq), at 3,112,698 to 3,113,495 _2468 DvMF_2469: DvMF_2469 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,113,492 to 3,114,058 _2469 DvMF_2470: DvMF_2470 - molybdopterin oxidoreductase (RefSeq), at 3,114,070 to 3,116,325 _2470 Position (kb) 3112 3113 3114Strain fitness (log2 ratio) -1 0 1at 3111.773 kb on + strand, within DvMF_2466at 3111.846 kb on - strand, within DvMF_2466at 3111.846 kb on - strand, within DvMF_2466at 3111.900 kb on - strandat 3111.946 kb on + strandat 3111.954 kb on - strandat 3111.965 kb on + strandat 3112.050 kb on - strandat 3112.149 kb on + strandat 3112.191 kb on - strand, within DvMF_2467at 3112.331 kb on - strand, within DvMF_2467at 3112.340 kb on + strand, within DvMF_2467at 3112.348 kb on - strand, within DvMF_2467at 3112.358 kb on - strand, within DvMF_2467at 3112.359 kb on - strand, within DvMF_2467at 3112.381 kb on - strand, within DvMF_2467at 3112.696 kb on + strandat 3113.082 kb on + strand, within DvMF_2468at 3113.090 kb on - strand, within DvMF_2468at 3113.350 kb on - strand, within DvMF_2468at 3113.421 kb on + strandat 3113.475 kb on + strandat 3113.730 kb on + strand, within DvMF_2469at 3113.829 kb on + strand, within DvMF_2469at 3113.859 kb on - strand, within DvMF_2469at 3113.912 kb on - strand, within DvMF_2469at 3114.271 kb on - strandat 3114.342 kb on - strand, within DvMF_2470

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,111,773 + DvMF_2466 0.81 -0.4
3,111,846 - DvMF_2466 0.87 -0.5
3,111,846 - DvMF_2466 0.87 -0.3
3,111,900 - -0.4
3,111,946 + -0.4
3,111,954 - -0.5
3,111,965 + -0.5
3,112,050 - -1.0
3,112,149 + -1.6
3,112,191 - DvMF_2467 0.15 +0.2
3,112,331 - DvMF_2467 0.42 -0.2
3,112,340 + DvMF_2467 0.44 -0.0
3,112,348 - DvMF_2467 0.45 +1.1
3,112,358 - DvMF_2467 0.47 -0.6
3,112,359 - DvMF_2467 0.47 -0.1
3,112,381 - DvMF_2467 0.51 -0.0
3,112,696 + -0.1
3,113,082 + DvMF_2468 0.48 -0.2
3,113,090 - DvMF_2468 0.49 -0.2
3,113,350 - DvMF_2468 0.82 -0.5
3,113,421 + -0.9
3,113,475 + -0.0
3,113,730 + DvMF_2469 0.42 +0.2
3,113,829 + DvMF_2469 0.59 -0.9
3,113,859 - DvMF_2469 0.65 -0.2
3,113,912 - DvMF_2469 0.74 -0.4
3,114,271 - -0.3
3,114,342 - DvMF_2470 0.12 -0.3

Or see this region's nucleotide sequence