Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2419 and DvMF_2420 are separated by 561 nucleotides DvMF_2420 and DvMF_2421 are separated by 182 nucleotides DvMF_2421 and DvMF_2422 are separated by 97 nucleotides
DvMF_2419: DvMF_2419 - type III secretion regulator YopN/LcrE/InvE/MxiC (RefSeq), at 3,056,624 to 3,057,763
_2419
DvMF_2420: DvMF_2420 - hypothetical protein (RefSeq), at 3,058,325 to 3,058,621
_2420
DvMF_2421: DvMF_2421 - hypothetical protein (RefSeq), at 3,058,804 to 3,059,316
_2421
DvMF_2422: DvMF_2422 - type III secretion low calcium response chaperone LcrH/SycD (RefSeq), at 3,059,414 to 3,059,917
_2422
Position (kb)
3058
3059 Strain fitness (log2 ratio)
-1
0
1 at 3057.423 kb on + strand, within DvMF_2419 at 3057.604 kb on - strand, within DvMF_2419 at 3057.722 kb on + strand at 3057.997 kb on + strand at 3058.508 kb on + strand, within DvMF_2420 at 3058.795 kb on - strand at 3059.228 kb on - strand, within DvMF_2421 at 3059.228 kb on - strand, within DvMF_2421 at 3059.228 kb on - strand, within DvMF_2421 at 3059.238 kb on - strand, within DvMF_2421 at 3059.480 kb on - strand, within DvMF_2422 at 3059.515 kb on + strand, within DvMF_2422
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml remove 3,057,423 + DvMF_2419 0.70 -0.8 3,057,604 - DvMF_2419 0.86 -1.2 3,057,722 + -0.2 3,057,997 + -0.6 3,058,508 + DvMF_2420 0.62 -0.8 3,058,795 - -0.4 3,059,228 - DvMF_2421 0.83 -0.5 3,059,228 - DvMF_2421 0.83 -0.4 3,059,228 - DvMF_2421 0.83 +1.4 3,059,238 - DvMF_2421 0.85 -0.3 3,059,480 - DvMF_2422 0.13 -0.5 3,059,515 + DvMF_2422 0.20 +0.1
Or see this region's nucleotide sequence