Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2226

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2225 and DvMF_2226 are separated by 655 nucleotidesDvMF_2226 and DvMF_2227 are separated by 448 nucleotidesDvMF_2227 and DvMF_2228 are separated by 61 nucleotides DvMF_2225: DvMF_2225 - hypothetical protein (RefSeq), at 2,786,930 to 2,787,349 _2225 DvMF_2226: DvMF_2226 - type IV pilus assembly PilZ (RefSeq), at 2,788,005 to 2,788,403 _2226 DvMF_2227: DvMF_2227 - Dinitrogenase iron-molybdenum cofactor biosynthesis protein (RefSeq), at 2,788,852 to 2,789,220 _2227 DvMF_2228: DvMF_2228 - SEC-C motif domain protein (RefSeq), at 2,789,282 to 2,789,779 _2228 Position (kb) 2788 2789Strain fitness (log2 ratio) -1 0 1at 2787.260 kb on - strand, within DvMF_2225at 2787.626 kb on - strandat 2787.930 kb on + strandat 2788.194 kb on - strand, within DvMF_2226at 2788.244 kb on + strand, within DvMF_2226at 2788.353 kb on + strand, within DvMF_2226at 2788.813 kb on - strandat 2788.914 kb on + strand, within DvMF_2227at 2788.922 kb on - strand, within DvMF_2227at 2789.055 kb on + strand, within DvMF_2227at 2789.101 kb on - strand, within DvMF_2227at 2789.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,787,260 - DvMF_2225 0.79 -0.4
2,787,626 - -0.5
2,787,930 + -0.4
2,788,194 - DvMF_2226 0.47 +1.5
2,788,244 + DvMF_2226 0.60 +0.1
2,788,353 + DvMF_2226 0.87 -1.1
2,788,813 - +0.4
2,788,914 + DvMF_2227 0.17 +0.8
2,788,922 - DvMF_2227 0.19 +0.9
2,789,055 + DvMF_2227 0.55 -0.0
2,789,101 - DvMF_2227 0.67 +0.9
2,789,324 - +0.0

Or see this region's nucleotide sequence