Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2221

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2219 and DvMF_2220 are separated by 85 nucleotidesDvMF_2220 and DvMF_2221 are separated by 178 nucleotidesDvMF_2221 and DvMF_2222 overlap by 4 nucleotides DvMF_2219: DvMF_2219 - nuclease (SNase domain protein) (RefSeq), at 2,779,206 to 2,779,823 _2219 DvMF_2220: DvMF_2220 - lipolytic protein G-D-S-L family (RefSeq), at 2,779,909 to 2,780,553 _2220 DvMF_2221: DvMF_2221 - ABC transporter related (RefSeq), at 2,780,732 to 2,781,490 _2221 DvMF_2222: DvMF_2222 - protein of unknown function DUF214 (RefSeq), at 2,781,487 to 2,784,294 _2222 Position (kb) 2780 2781 2782Strain fitness (log2 ratio) -1 0 1at 2780.026 kb on + strand, within DvMF_2220at 2780.034 kb on - strand, within DvMF_2220at 2780.282 kb on - strand, within DvMF_2220at 2780.620 kb on - strandat 2780.803 kb on + strandat 2780.886 kb on + strand, within DvMF_2221at 2781.040 kb on + strand, within DvMF_2221at 2781.050 kb on - strand, within DvMF_2221at 2781.060 kb on + strand, within DvMF_2221at 2781.806 kb on + strand, within DvMF_2222at 2781.818 kb on + strand, within DvMF_2222at 2781.875 kb on + strand, within DvMF_2222at 2781.951 kb on + strand, within DvMF_2222at 2781.951 kb on + strand, within DvMF_2222at 2782.204 kb on - strand, within DvMF_2222

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,780,026 + DvMF_2220 0.18 -0.2
2,780,034 - DvMF_2220 0.19 -0.2
2,780,282 - DvMF_2220 0.58 +1.6
2,780,620 - -1.0
2,780,803 + -0.6
2,780,886 + DvMF_2221 0.20 -0.6
2,781,040 + DvMF_2221 0.41 -0.8
2,781,050 - DvMF_2221 0.42 -1.1
2,781,060 + DvMF_2221 0.43 -0.3
2,781,806 + DvMF_2222 0.11 -0.7
2,781,818 + DvMF_2222 0.12 -0.4
2,781,875 + DvMF_2222 0.14 +0.2
2,781,951 + DvMF_2222 0.17 -1.0
2,781,951 + DvMF_2222 0.17 -0.7
2,782,204 - DvMF_2222 0.26 -0.3

Or see this region's nucleotide sequence