Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2206

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2205 and DvMF_2206 are separated by 56 nucleotidesDvMF_2206 and era are separated by 975 nucleotides DvMF_2205: DvMF_2205 - sugar fermentation stimulation protein (RefSeq), at 2,758,864 to 2,759,802 _2205 DvMF_2206: DvMF_2206 - hypothetical protein (RefSeq), at 2,759,859 to 2,760,134 _2206 DvMF_2207: era - GTP-binding protein Era (RefSeq), at 2,761,110 to 2,762,033 era Position (kb) 2759 2760 2761Strain fitness (log2 ratio) -1 0 1at 2759.089 kb on + strand, within DvMF_2205at 2759.135 kb on + strand, within DvMF_2205at 2759.179 kb on - strand, within DvMF_2205at 2759.179 kb on - strand, within DvMF_2205at 2759.343 kb on - strand, within DvMF_2205at 2759.479 kb on - strand, within DvMF_2205at 2759.627 kb on + strand, within DvMF_2205at 2759.635 kb on - strand, within DvMF_2205at 2759.654 kb on + strand, within DvMF_2205at 2759.754 kb on - strandat 2759.994 kb on - strand, within DvMF_2206at 2760.308 kb on + strandat 2760.425 kb on - strandat 2760.466 kb on - strandat 2760.585 kb on - strandat 2760.612 kb on + strandat 2760.620 kb on - strandat 2760.882 kb on - strandat 2760.921 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,759,089 + DvMF_2205 0.24 -0.5
2,759,135 + DvMF_2205 0.29 -0.7
2,759,179 - DvMF_2205 0.34 -0.4
2,759,179 - DvMF_2205 0.34 -0.7
2,759,343 - DvMF_2205 0.51 -0.6
2,759,479 - DvMF_2205 0.65 -0.3
2,759,627 + DvMF_2205 0.81 -0.4
2,759,635 - DvMF_2205 0.82 -0.3
2,759,654 + DvMF_2205 0.84 -1.2
2,759,754 - -1.4
2,759,994 - DvMF_2206 0.49 -0.7
2,760,308 + -0.5
2,760,425 - +0.3
2,760,466 - -0.0
2,760,585 - +0.4
2,760,612 + -0.5
2,760,620 - +0.8
2,760,882 - -0.3
2,760,921 + -0.4

Or see this region's nucleotide sequence