Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2171

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2171 and DvMF_2172 are separated by 148 nucleotides DvMF_2171: DvMF_2171 - hypothetical protein (RefSeq), at 2,709,455 to 2,709,613 _2171 DvMF_2172: DvMF_2172 - DSBA oxidoreductase (RefSeq), at 2,709,762 to 2,710,565 _2172 Position (kb) 2709 2710Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2708.473 kb on + strandat 2708.582 kb on - strandat 2708.737 kb on - strandat 2708.747 kb on + strandat 2708.755 kb on - strandat 2708.755 kb on - strandat 2708.755 kb on - strandat 2708.846 kb on + strandat 2709.023 kb on + strandat 2709.090 kb on - strandat 2709.348 kb on + strandat 2709.452 kb on + strandat 2710.190 kb on + strand, within DvMF_2172at 2710.235 kb on - strand, within DvMF_2172at 2710.417 kb on + strand, within DvMF_2172at 2710.524 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,708,473 + +0.1
2,708,582 - +0.3
2,708,737 - -1.0
2,708,747 + -0.4
2,708,755 - -0.6
2,708,755 - -0.5
2,708,755 - -1.1
2,708,846 + -0.2
2,709,023 + -0.5
2,709,090 - -0.6
2,709,348 + -0.2
2,709,452 + -0.4
2,710,190 + DvMF_2172 0.53 -3.9
2,710,235 - DvMF_2172 0.59 -4.1
2,710,417 + DvMF_2172 0.81 -4.3
2,710,524 + -2.8

Or see this region's nucleotide sequence