Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1897

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1896 and DvMF_1897 are separated by 185 nucleotidesDvMF_1897 and DvMF_1898 are separated by 292 nucleotides DvMF_1896: DvMF_1896 - transferase hexapeptide repeat containing protein (RefSeq), at 2,334,737 to 2,335,408 _1896 DvMF_1897: DvMF_1897 - polysaccharide biosynthesis protein (RefSeq), at 2,335,594 to 2,337,129 _1897 DvMF_1898: DvMF_1898 - HpcH/HpaI aldolase (RefSeq), at 2,337,422 to 2,338,201 _1898 Position (kb) 2335 2336 2337 2338Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2334.783 kb on + strandat 2334.783 kb on + strandat 2335.049 kb on - strand, within DvMF_1896at 2335.341 kb on + strandat 2335.360 kb on - strandat 2335.572 kb on - strandat 2337.087 kb on + strandat 2337.132 kb on - strandat 2337.201 kb on + strandat 2337.393 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,334,783 + -3.5
2,334,783 + -3.2
2,335,049 - DvMF_1896 0.46 -3.2
2,335,341 + -3.5
2,335,360 - -4.0
2,335,572 - -0.3
2,337,087 + -0.5
2,337,132 - +0.3
2,337,201 + -0.7
2,337,393 + -0.2

Or see this region's nucleotide sequence