Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1788

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1787 and DvMF_1788 are separated by 441 nucleotidesDvMF_1788 and DvMF_1789 are separated by 176 nucleotidesDvMF_1789 and DvMF_1790 are separated by 57 nucleotides DvMF_1787: DvMF_1787 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,186,983 to 2,187,639 _1787 DvMF_1788: DvMF_1788 - SNARE associated Golgi protein (RefSeq), at 2,188,081 to 2,189,025 _1788 DvMF_1789: DvMF_1789 - phosphatidylserine decarboxylase (RefSeq), at 2,189,202 to 2,189,846 _1789 DvMF_1790: DvMF_1790 - CDP-diacylglycerol/serine O-phosphatidyltransferase (RefSeq), at 2,189,904 to 2,190,653 _1790 Position (kb) 2188 2189 2190Strain fitness (log2 ratio) -1 0 1 2at 2187.426 kb on + strand, within DvMF_1787at 2187.434 kb on - strand, within DvMF_1787at 2187.478 kb on + strand, within DvMF_1787at 2187.527 kb on - strand, within DvMF_1787at 2187.801 kb on + strandat 2187.808 kb on + strandat 2187.840 kb on - strandat 2187.883 kb on + strandat 2187.950 kb on - strandat 2187.979 kb on - strandat 2187.981 kb on + strandat 2188.011 kb on - strandat 2188.229 kb on + strand, within DvMF_1788at 2188.247 kb on + strand, within DvMF_1788at 2188.370 kb on - strand, within DvMF_1788at 2188.542 kb on - strand, within DvMF_1788at 2188.644 kb on + strand, within DvMF_1788at 2188.692 kb on - strand, within DvMF_1788at 2188.843 kb on - strand, within DvMF_1788at 2188.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,187,426 + DvMF_1787 0.67 -0.5
2,187,434 - DvMF_1787 0.69 +0.1
2,187,478 + DvMF_1787 0.75 -0.2
2,187,527 - DvMF_1787 0.83 +0.1
2,187,801 + -0.5
2,187,808 + -0.8
2,187,840 - -0.7
2,187,883 + -0.0
2,187,950 - -0.3
2,187,979 - -0.0
2,187,981 + -0.2
2,188,011 - +0.2
2,188,229 + DvMF_1788 0.16 -0.3
2,188,247 + DvMF_1788 0.18 -0.2
2,188,370 - DvMF_1788 0.31 -0.3
2,188,542 - DvMF_1788 0.49 +0.0
2,188,644 + DvMF_1788 0.60 -0.3
2,188,692 - DvMF_1788 0.65 +0.8
2,188,843 - DvMF_1788 0.81 +1.8
2,188,977 + +0.3

Or see this region's nucleotide sequence