Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1786

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1784 and DvMF_1785 are separated by 420 nucleotidesDvMF_1785 and DvMF_1786 are separated by 199 nucleotidesDvMF_1786 and DvMF_1787 are separated by 224 nucleotides DvMF_1784: DvMF_1784 - membrane-bound metal-dependent hydrolase (RefSeq), at 2,183,779 to 2,184,876 _1784 DvMF_1785: DvMF_1785 - no description, at 2,185,297 to 2,185,551 _1785 DvMF_1786: DvMF_1786 - protein of unknown function DUF523 (RefSeq), at 2,185,751 to 2,186,758 _1786 DvMF_1787: DvMF_1787 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,186,983 to 2,187,639 _1787 Position (kb) 2185 2186 2187Strain fitness (log2 ratio) -1 0 1at 2184.781 kb on + strandat 2184.781 kb on + strandat 2184.781 kb on + strandat 2184.836 kb on - strandat 2184.998 kb on + strandat 2185.342 kb on - strand, within DvMF_1785at 2185.356 kb on + strand, within DvMF_1785at 2185.364 kb on - strand, within DvMF_1785at 2186.052 kb on - strand, within DvMF_1786at 2186.388 kb on + strand, within DvMF_1786at 2186.485 kb on + strand, within DvMF_1786at 2186.485 kb on + strand, within DvMF_1786at 2186.485 kb on + strand, within DvMF_1786at 2186.618 kb on - strand, within DvMF_1786at 2186.646 kb on - strand, within DvMF_1786at 2186.715 kb on - strandat 2186.733 kb on - strandat 2186.937 kb on - strandat 2187.426 kb on + strand, within DvMF_1787at 2187.434 kb on - strand, within DvMF_1787at 2187.478 kb on + strand, within DvMF_1787at 2187.527 kb on - strand, within DvMF_1787

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,184,781 + +0.1
2,184,781 + -0.6
2,184,781 + -0.5
2,184,836 - -0.3
2,184,998 + -0.4
2,185,342 - DvMF_1785 0.18 -1.0
2,185,356 + DvMF_1785 0.23 -0.8
2,185,364 - DvMF_1785 0.26 -0.1
2,186,052 - DvMF_1786 0.30 -0.4
2,186,388 + DvMF_1786 0.63 +0.7
2,186,485 + DvMF_1786 0.73 -0.5
2,186,485 + DvMF_1786 0.73 -0.3
2,186,485 + DvMF_1786 0.73 +1.2
2,186,618 - DvMF_1786 0.86 -0.7
2,186,646 - DvMF_1786 0.89 -0.5
2,186,715 - -0.3
2,186,733 - -1.3
2,186,937 - -0.8
2,187,426 + DvMF_1787 0.67 -0.5
2,187,434 - DvMF_1787 0.69 +0.1
2,187,478 + DvMF_1787 0.75 -0.2
2,187,527 - DvMF_1787 0.83 +0.1

Or see this region's nucleotide sequence