Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1755

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1754 and DvMF_1755 are separated by 434 nucleotidesDvMF_1755 and DvMF_1756 are separated by 165 nucleotides DvMF_1754: DvMF_1754 - diguanylate phosphodiesterase (RefSeq), at 2,141,973 to 2,143,268 _1754 DvMF_1755: DvMF_1755 - phosphoesterase RecJ domain protein (RefSeq), at 2,143,703 to 2,144,965 _1755 DvMF_1756: DvMF_1756 - hypothetical protein (RefSeq), at 2,145,131 to 2,145,946 _1756 Position (kb) 2143 2144 2145Strain fitness (log2 ratio) -1 0 1 2 3at 2142.871 kb on - strand, within DvMF_1754at 2142.891 kb on + strand, within DvMF_1754at 2142.899 kb on - strand, within DvMF_1754at 2142.902 kb on + strand, within DvMF_1754at 2142.983 kb on - strand, within DvMF_1754at 2143.021 kb on - strand, within DvMF_1754at 2143.297 kb on + strandat 2143.305 kb on - strandat 2143.312 kb on + strandat 2143.335 kb on + strandat 2143.532 kb on - strandat 2143.544 kb on + strandat 2143.574 kb on + strandat 2143.576 kb on - strandat 2143.809 kb on + strandat 2144.059 kb on - strand, within DvMF_1755at 2145.136 kb on - strandat 2145.237 kb on + strand, within DvMF_1756at 2145.391 kb on - strand, within DvMF_1756at 2145.457 kb on - strand, within DvMF_1756at 2145.607 kb on - strand, within DvMF_1756at 2145.607 kb on - strand, within DvMF_1756at 2145.822 kb on - strand, within DvMF_1756at 2145.822 kb on - strand, within DvMF_1756at 2145.897 kb on + strandat 2145.950 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
remove
2,142,871 - DvMF_1754 0.69 -1.2
2,142,891 + DvMF_1754 0.71 -0.4
2,142,899 - DvMF_1754 0.71 -0.4
2,142,902 + DvMF_1754 0.72 -0.9
2,142,983 - DvMF_1754 0.78 -1.1
2,143,021 - DvMF_1754 0.81 +0.3
2,143,297 + -0.4
2,143,305 - -0.1
2,143,312 + -0.8
2,143,335 + -0.6
2,143,532 - -1.3
2,143,544 + -0.1
2,143,574 + -0.4
2,143,576 - -0.7
2,143,809 + -0.3
2,144,059 - DvMF_1755 0.28 +0.2
2,145,136 - +3.4
2,145,237 + DvMF_1756 0.13 -0.0
2,145,391 - DvMF_1756 0.32 +1.1
2,145,457 - DvMF_1756 0.40 +0.9
2,145,607 - DvMF_1756 0.58 +0.9
2,145,607 - DvMF_1756 0.58 +1.1
2,145,822 - DvMF_1756 0.85 +0.9
2,145,822 - DvMF_1756 0.85 +0.7
2,145,897 + -0.4
2,145,950 - -0.4

Or see this region's nucleotide sequence