Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1721

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1720 and DvMF_1721 are separated by 317 nucleotidesDvMF_1721 and DvMF_1722 are separated by 500 nucleotides DvMF_1720: DvMF_1720 - diguanylate phosphodiesterase (RefSeq), at 2,103,157 to 2,104,395 _1720 DvMF_1721: DvMF_1721 - Phenylacetate--CoA ligase (RefSeq), at 2,104,713 to 2,106,008 _1721 DvMF_1722: DvMF_1722 - phosphoribosylamine--glycine ligase (RefSeq), at 2,106,509 to 2,107,786 _1722 Position (kb) 2104 2105 2106 2107Strain fitness (log2 ratio) -2 -1 0 1at 2103.845 kb on - strand, within DvMF_1720at 2103.918 kb on - strand, within DvMF_1720at 2103.940 kb on + strand, within DvMF_1720at 2104.260 kb on + strand, within DvMF_1720at 2104.339 kb on + strandat 2104.417 kb on + strandat 2104.996 kb on - strand, within DvMF_1721at 2105.206 kb on - strand, within DvMF_1721at 2105.236 kb on + strand, within DvMF_1721at 2105.241 kb on + strand, within DvMF_1721at 2105.244 kb on - strand, within DvMF_1721at 2105.451 kb on - strand, within DvMF_1721at 2105.472 kb on + strand, within DvMF_1721at 2105.604 kb on + strand, within DvMF_1721at 2105.675 kb on + strand, within DvMF_1721at 2105.847 kb on - strand, within DvMF_1721at 2105.851 kb on + strand, within DvMF_1721at 2105.932 kb on + strandat 2105.932 kb on + strandat 2105.932 kb on + strandat 2105.932 kb on + strandat 2105.940 kb on - strandat 2105.940 kb on - strandat 2105.944 kb on + strandat 2105.961 kb on + strandat 2106.547 kb on + strandat 2106.819 kb on - strand, within DvMF_1722at 2106.882 kb on + strand, within DvMF_1722

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,103,845 - DvMF_1720 0.56 -0.5
2,103,918 - DvMF_1720 0.61 -0.3
2,103,940 + DvMF_1720 0.63 -0.7
2,104,260 + DvMF_1720 0.89 -0.9
2,104,339 + -0.6
2,104,417 + -0.3
2,104,996 - DvMF_1721 0.22 -0.1
2,105,206 - DvMF_1721 0.38 -0.8
2,105,236 + DvMF_1721 0.40 -0.6
2,105,241 + DvMF_1721 0.41 -1.0
2,105,244 - DvMF_1721 0.41 -0.2
2,105,451 - DvMF_1721 0.57 -0.8
2,105,472 + DvMF_1721 0.59 -0.8
2,105,604 + DvMF_1721 0.69 -0.8
2,105,675 + DvMF_1721 0.74 -1.0
2,105,847 - DvMF_1721 0.88 -0.4
2,105,851 + DvMF_1721 0.88 -0.3
2,105,932 + -0.0
2,105,932 + -0.7
2,105,932 + -1.3
2,105,932 + -0.7
2,105,940 - -0.8
2,105,940 - -2.2
2,105,944 + +0.0
2,105,961 + +0.4
2,106,547 + -0.1
2,106,819 - DvMF_1722 0.24 -0.3
2,106,882 + DvMF_1722 0.29 -1.0

Or see this region's nucleotide sequence