Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1703

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsA and DvMF_1703 overlap by 17 nucleotidesDvMF_1703 and DvMF_1704 are separated by 107 nucleotides DvMF_1702: rpsA - 30S ribosomal protein S1 (RefSeq), at 2,077,042 to 2,078,775 rpsA DvMF_1703: DvMF_1703 - signal peptide peptidase SppA, 36K type (RefSeq), at 2,078,759 to 2,079,652 _1703 DvMF_1704: DvMF_1704 - GCN5-related N-acetyltransferase (RefSeq), at 2,079,760 to 2,080,707 _1704 Position (kb) 2078 2079 2080Strain fitness (log2 ratio) -2 -1 0 1at 2078.900 kb on + strand, within DvMF_1703at 2079.130 kb on + strand, within DvMF_1703at 2079.553 kb on + strand, within DvMF_1703at 2079.561 kb on - strand, within DvMF_1703at 2079.561 kb on - strand, within DvMF_1703at 2080.070 kb on + strand, within DvMF_1704at 2080.156 kb on - strand, within DvMF_1704at 2080.166 kb on - strand, within DvMF_1704at 2080.229 kb on - strand, within DvMF_1704at 2080.229 kb on - strand, within DvMF_1704at 2080.267 kb on + strand, within DvMF_1704at 2080.287 kb on + strand, within DvMF_1704at 2080.472 kb on + strand, within DvMF_1704at 2080.550 kb on + strand, within DvMF_1704at 2080.551 kb on - strand, within DvMF_1704at 2080.551 kb on - strand, within DvMF_1704at 2080.568 kb on - strand, within DvMF_1704at 2080.634 kb on - strandat 2080.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,078,900 + DvMF_1703 0.16 -2.2
2,079,130 + DvMF_1703 0.41 -1.0
2,079,553 + DvMF_1703 0.89 -1.2
2,079,561 - DvMF_1703 0.90 -1.0
2,079,561 - DvMF_1703 0.90 -1.2
2,080,070 + DvMF_1704 0.33 -0.0
2,080,156 - DvMF_1704 0.42 -0.8
2,080,166 - DvMF_1704 0.43 -0.4
2,080,229 - DvMF_1704 0.49 -0.4
2,080,229 - DvMF_1704 0.49 -0.2
2,080,267 + DvMF_1704 0.53 +0.7
2,080,287 + DvMF_1704 0.56 -1.9
2,080,472 + DvMF_1704 0.75 -1.0
2,080,550 + DvMF_1704 0.83 -0.5
2,080,551 - DvMF_1704 0.83 -0.6
2,080,551 - DvMF_1704 0.83 -0.1
2,080,568 - DvMF_1704 0.85 -0.4
2,080,634 - -0.4
2,080,650 + -0.5

Or see this region's nucleotide sequence