Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1695
Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Carbenicillin 0.0625 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,064,951 | + | DvMF_1694 | 0.49 | +0.6 | |
2,064,951 | + | DvMF_1694 | 0.49 | -0.5 | |
2,064,959 | - | DvMF_1694 | 0.49 | -0.3 | |
2,064,959 | - | DvMF_1694 | 0.49 | -0.5 | |
2,065,106 | + | DvMF_1694 | 0.58 | +0.1 | |
2,065,177 | + | DvMF_1694 | 0.62 | -0.3 | |
2,065,482 | - | DvMF_1694 | 0.80 | +0.2 | |
2,065,590 | - | DvMF_1694 | 0.86 | +0.5 | |
2,065,877 | - | -0.5 | |||
2,065,936 | + | DvMF_1695 | 0.18 | +0.2 | |
2,066,005 | + | DvMF_1695 | 0.29 | -0.6 | |
2,066,077 | - | DvMF_1695 | 0.40 | -0.7 | |
2,066,132 | - | DvMF_1695 | 0.49 | -1.3 | |
2,066,132 | - | DvMF_1695 | 0.49 | -0.8 | |
2,066,287 | - | DvMF_1695 | 0.73 | -0.6 | |
2,066,374 | - | DvMF_1695 | 0.87 | -0.4 | |
2,066,376 | + | DvMF_1695 | 0.87 | -1.2 | |
2,066,459 | - | -0.5 | |||
2,066,570 | - | +0.2 | |||
2,066,835 | - | -0.1 | |||
2,066,879 | + | -0.3 | |||
2,067,119 | - | DvMF_1696 | 0.19 | -0.4 | |
2,067,119 | - | DvMF_1696 | 0.19 | -0.7 | |
2,067,124 | - | DvMF_1696 | 0.20 | -2.1 | |
2,067,239 | - | DvMF_1696 | 0.29 | -0.3 | |
2,067,380 | + | DvMF_1696 | 0.41 | -0.7 | |
2,067,380 | + | DvMF_1696 | 0.41 | -0.6 |
Or see this region's nucleotide sequence