Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1631

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1630 and DvMF_1631 are separated by 349 nucleotidesDvMF_1631 and DvMF_1632 overlap by 4 nucleotides DvMF_1630: DvMF_1630 - protein of unknown function DUF214 (RefSeq), at 2,009,359 to 2,010,507 _1630 DvMF_1631: DvMF_1631 - two component transcriptional regulator, winged helix family (RefSeq), at 2,010,857 to 2,011,684 _1631 DvMF_1632: DvMF_1632 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,011,681 to 2,013,288 _1632 Position (kb) 2010 2011 2012Strain fitness (log2 ratio) -3 -2 -1 0 1at 2009.863 kb on - strand, within DvMF_1630at 2009.865 kb on + strand, within DvMF_1630at 2009.921 kb on + strand, within DvMF_1630at 2010.724 kb on + strandat 2010.864 kb on + strandat 2010.872 kb on - strandat 2010.872 kb on - strandat 2010.874 kb on + strandat 2010.921 kb on - strandat 2011.028 kb on - strand, within DvMF_1631at 2011.028 kb on - strand, within DvMF_1631at 2011.044 kb on + strand, within DvMF_1631at 2011.208 kb on + strand, within DvMF_1631at 2011.216 kb on - strand, within DvMF_1631at 2011.433 kb on + strand, within DvMF_1631at 2011.473 kb on - strand, within DvMF_1631at 2011.783 kb on - strandat 2011.835 kb on - strandat 2011.987 kb on - strand, within DvMF_1632at 2012.061 kb on + strand, within DvMF_1632at 2012.102 kb on + strand, within DvMF_1632at 2012.219 kb on + strand, within DvMF_1632at 2012.328 kb on - strand, within DvMF_1632at 2012.335 kb on - strand, within DvMF_1632at 2012.657 kb on + strand, within DvMF_1632

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,009,863 - DvMF_1630 0.44 -0.2
2,009,865 + DvMF_1630 0.44 -0.1
2,009,921 + DvMF_1630 0.49 +0.1
2,010,724 + -0.5
2,010,864 + -0.0
2,010,872 - -0.3
2,010,872 - -0.7
2,010,874 + -0.0
2,010,921 - -0.3
2,011,028 - DvMF_1631 0.21 -0.7
2,011,028 - DvMF_1631 0.21 -0.4
2,011,044 + DvMF_1631 0.23 -0.3
2,011,208 + DvMF_1631 0.42 -1.1
2,011,216 - DvMF_1631 0.43 -1.5
2,011,433 + DvMF_1631 0.70 -0.3
2,011,473 - DvMF_1631 0.74 -2.9
2,011,783 - +0.1
2,011,835 - -0.3
2,011,987 - DvMF_1632 0.19 -0.4
2,012,061 + DvMF_1632 0.24 -0.3
2,012,102 + DvMF_1632 0.26 -0.9
2,012,219 + DvMF_1632 0.33 -0.8
2,012,328 - DvMF_1632 0.40 +0.5
2,012,335 - DvMF_1632 0.41 -0.4
2,012,657 + DvMF_1632 0.61 -0.6

Or see this region's nucleotide sequence