Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1360

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1359 and DvMF_1360 overlap by 4 nucleotidesDvMF_1360 and DvMF_1361 overlap by 1 nucleotides DvMF_1359: DvMF_1359 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,663,045 to 1,663,962 _1359 DvMF_1360: DvMF_1360 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,663,959 to 1,665,536 _1360 DvMF_1361: DvMF_1361 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,665,536 to 1,668,274 _1361 Position (kb) 1663 1664 1665 1666Strain fitness (log2 ratio) -1 0 1 2at 1663.580 kb on + strand, within DvMF_1359at 1663.840 kb on + strand, within DvMF_1359at 1664.064 kb on + strandat 1664.104 kb on - strandat 1664.167 kb on - strand, within DvMF_1360at 1664.419 kb on - strand, within DvMF_1360at 1664.419 kb on - strand, within DvMF_1360at 1665.072 kb on - strand, within DvMF_1360at 1665.176 kb on - strand, within DvMF_1360at 1665.183 kb on - strand, within DvMF_1360at 1665.183 kb on - strand, within DvMF_1360at 1665.320 kb on + strand, within DvMF_1360at 1665.328 kb on - strand, within DvMF_1360at 1665.413 kb on - strandat 1665.413 kb on - strandat 1665.413 kb on - strandat 1665.524 kb on + strandat 1665.797 kb on + strandat 1666.164 kb on + strand, within DvMF_1361at 1666.250 kb on + strand, within DvMF_1361at 1666.292 kb on + strand, within DvMF_1361

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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1,663,580 + DvMF_1359 0.58 -0.8
1,663,840 + DvMF_1359 0.87 -0.3
1,664,064 + +0.7
1,664,104 - +0.9
1,664,167 - DvMF_1360 0.13 +0.9
1,664,419 - DvMF_1360 0.29 +0.4
1,664,419 - DvMF_1360 0.29 +0.7
1,665,072 - DvMF_1360 0.71 +0.6
1,665,176 - DvMF_1360 0.77 +0.2
1,665,183 - DvMF_1360 0.78 +0.6
1,665,183 - DvMF_1360 0.78 +0.5
1,665,320 + DvMF_1360 0.86 +0.2
1,665,328 - DvMF_1360 0.87 +2.6
1,665,413 - +0.4
1,665,413 - +1.0
1,665,413 - +0.6
1,665,524 + +0.6
1,665,797 + +0.1
1,666,164 + DvMF_1361 0.23 +1.0
1,666,250 + DvMF_1361 0.26 +0.0
1,666,292 + DvMF_1361 0.28 +0.5

Or see this region's nucleotide sequence